Parental gene: | COPS5, ENSPTRG00000020317 |
| Aliases: | None |
| Description: | COP9 signalosome subunit 5 [Source:HGNC Symbol;Acc:2240] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 8:64892890..64912349(-) |
>ENSPTRG00000020317
ATGGCGGCGTCCGGGAGCGGTATGGCCCAGAAAACCTGGGAACTGGCCAACAACATGCAGGAAGCTCAGAGTATCGATGA
AATCTACAAATACGACAAGAAACAGCAGCAAGAAATCCTGGCGGCGAAGCCCTGGACTAAGGATCACCATTACTTTAAGT
ACTGCAAAATCTCAGCATTGGCTCTGCTGAAGATGGTGATGCATGCCAGATCGGGAGGCAACTTGGAAGTGATGGGTCTG
ATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGT
AAATGCTCAGGCTGCTGCATATGAATACATGGCTGCATACATAGAAAATGCGAAACAGGTTGGCCGCCTTGAAAATGCAA
TCGGGTGGTATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGTTAGTACTCAGATGCTCAATCAGCAG
TTCCAGGAACCATTTGTAGCAGTGGTGATTGATCCAACAAGAACAATATCCGCAGGGAAAGTGAATCTTGGCGCCTTTAG
GACATACCCAAAGGGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATTCCACTTAATAAAATAGAAGATT
TTGGTGTACACTGCAAACAATATTATGCCTTAGAAGTCTCATATTTCAAATCCTCTTTGGATCGCAAATTGCTTGAGCTG
TTGTGGAATAAATACTGGGTGAATACGTTGAGTTCTTCTAGCTTGCTTACTAATGCAGACTATACCACTGGTCAGGTCTT
TGATTTGTCTGAAAAGTTAGAGCAGTCAGAAGCCCAGCTGGGACGAGGGAGTTTCATGTTGGGTTTAGAAACGCATGACC
GAAAATCAGAAGACAAACTTGCCAAAGCTACGAGAGACAGCTGTAAAACTACCATAGAAGCTATCCATGGATTGATGTCT
CAGGTTATTAAGGATAAACTGTTTAATCAAATTAACATCTCTTAA
ATGGCGGCGTCCGGGAGCGGTATGGCCCAGAAAACCTGGGAACTGGCCAACAACATGCAGGAAGCTCAGAGTATCGATGA
AATCTACAAATACGACAAGAAACAGCAGCAAGAAATCCTGGCGGCGAAGCCCTGGACTAAGGATCACCATTACTTTAAGT
ACTGCAAAATCTCAGCATTGGCTCTGCTGAAGATGGTGATGCATGCCAGATCGGGAGGCAACTTGGAAGTGATGGGTCTG
ATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGT
AAATGCTCAGGCTGCTGCATATGAATACATGGCTGCATACATAGAAAATGCGAAACAGGTTGGCCGCCTTGAAAATGCAA
TCGGGTGGTATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGTTAGTACTCAGATGCTCAATCAGCAG
TTCCAGGAACCATTTGTAGCAGTGGTGATTGATCCAACAAGAACAATATCCGCAGGGAAAGTGAATCTTGGCGCCTTTAG
GACATACCCAAAGGGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATTCCACTTAATAAAATAGAAGATT
TTGGTGTACACTGCAAACAATATTATGCCTTAGAAGTCTCATATTTCAAATCCTCTTTGGATCGCAAATTGCTTGAGCTG
TTGTGGAATAAATACTGGGTGAATACGTTGAGTTCTTCTAGCTTGCTTACTAATGCAGACTATACCACTGGTCAGGTCTT
TGATTTGTCTGAAAAGTTAGAGCAGTCAGAAGCCCAGCTGGGACGAGGGAGTTTCATGTTGGGTTTAGAAACGCATGACC
GAAAATCAGAAGACAAACTTGCCAAAGCTACGAGAGACAGCTGTAAAACTACCATAGAAGCTATCCATGGATTGATGTCT
CAGGTTATTAAGGATAAACTGTTTAATCAAATTAACATCTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .90 RPM |
| SRP007412_cerebellum | 6 .35 RPM |
| SRP007412_heart | 10 .73 RPM |
| SRP007412_kidney | 12 .45 RPM |
| SRP007412_liver | 6 .51 RPM |
| SRP007412_testis | 22 .76 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004632 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000121022 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011042 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007838 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010175 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010914 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018648 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_638 | 99.70 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2457 | 81.50 | 75.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000020317 retrocopies