Parental gene:

PSMD12, ENSPTRG00000022722

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:65996705..66022806(-)


>ENSPTRG00000022722
ATGGCGGACGGCGGCTCGGAGCGGGCTGACGGGCGCATCGTCAAGATGGAGGTGGACTACAGCGCCACGGTGGATCAGCG
CCTACCCGAGTGTGCGAAGCTAGCCAAGGAAGGAAGACTTCAAGAAGTCATTGAAACCCTTCTCTCTCTGGAAAAGCAGA
CTCGTACTGCTTCCGATATGGTGTCTACATCCCGTATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGG
GATTTACTTAATGAAAATATTATGCTTTTGTCCAAAAGGCGGAGTCAGTTAAAACAAGCTGTTGCCAAAATGGTTCAACA
GTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAG
GCAAGATTTATGTTGAAATTGAGCGTGCGCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAATGGTGATGTGAAA
GAGGCAGCCTCCATTTTACAGGAGTTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAAGAGCGAGTGGAATTTATTTT
GGAGCAAATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTT
TCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTAT
TTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCT
GAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACA
AGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTT
GTTGAGGACTATGGAATGGAATTAAGAAAAGGTTCCCTTGAGAGTCCTGCAACGGATGTTTTTGGTTCTACAGAGGAAGG
TGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTATACTCGGATAA
CAATGAAAAGGATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCCGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAG
ACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGA
CTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACGCATCTCATAGCCAAAGAGGAGATGATACATA
ATCTACAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .87 RPM
SRP007412_cerebellum 17 .96 RPM
SRP007412_heart 18 .27 RPM
SRP007412_kidney 15 .87 RPM
SRP007412_liver 26 .68 RPM
SRP007412_testis 41 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008691 ortholog_one2one 2 retrogenes
retro_cjac_1400, retro_cjac_2793,
Homo sapiens ENSG00000197170 ortholog_one2one 1 retrogene
retro_hsap_2801,
Gorilla gorilla ENSGGOG00000014761 ortholog_one2one 1 retrogene
retro_ggor_1947,
Loxodonta africana ENSLAFG00000010876 ortholog_one2one 1 retrogene
retro_lafr_467,
Nomascus leucogenys ENSNLEG00000001265 ortholog_one2one 1 retrogene
retro_nleu_1541,
Pongo abelii ENSPPYG00000008565 ortholog_one2one 1 retrogene
retro_pabe_2223,
Tupaia belangeri ENSTBEG00000014760 ortholog_one2one 1 retrogene
retro_tbel_443,
Tarsius syrichta ENSTSYG00000013154 ortholog_one2one 1 retrogene
retro_tsyr_1670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1898 88.65 100.00
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Download FASTA sequences of all ENSPTRG00000022722 retrocopies