Parental gene:

G3BP1, ENSPVAG00000017250

Aliases:None
Description:GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3254:57212..70709(+)


>ENSPVAG00000017250
ATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAATTTGTTAGACAATATTACACACTGTTGAACCAGGCCCC
AGACATGCTACACAGATTTTATGGAAAGAACTCTTCTTACGTCCATGGGGGATTGGATTCAAATGGAAAGCCAGCAGATG
CGGTCTATGGACAGAAGGAAATCCACAGGAAGGTGATGTCACAAAACTTCACCAATTGCCATACTAAGATTCGCCATGTT
GATGCTCATGCCACGCTGAACGATGCCACGCTGAACGATGGTGTGGTGGTCCAGGTGATGGGGTTGCTCTCTAATAACAA
CCAGGCTCTGAGGAGGTTCATGCAGACATTTGTGCTTGCTCCTGAGGGATCTGTTGCAAACAAGTTCTACGTTCACAATG
ATATCTTCAGATACCAAGATGAGGTCTTTGGTGGTTTTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTAGAAGAA
CCTGAAGAAAGACAGCAGACACCTGAGGTGGTACCCGATGATTCTGGGACTTTCTATGATCAGACTGTCAGCAATGACTT
GGAAGAACATTTGGAGGAACCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAATCGGAGCAAGAACCCGTATCTGAAA
TCCAAGAGGAAAAGTCTGAGCCAGTATTGGAAGAAACTGCTCCTGAGGATGCTCAGAAGAGTTCTTCTCCAGCACCTACA
GACATAGCTCAAACAGCGCAGGAAGACCTGAGGACATTTTCCTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGG
AGCCGTTCCAGTTACTGGGATACCACCTCATGTTGTTAAAGTACCAGCTTCACAGCCTCGTCCAGAGTCTAAACCTGAAT
CTCAGATTCCACCACAGAGGCCTCAGAGGGATCAAAGAGTTCGAGAACAACGAATAAATATTCCTCCCCAGAGGGGACCT
AGACCAATTCGGGAGGCTGGTGAGCAAGGCGATGTTGAACCCCGAAGAATTGTGAGACACCCTGACAGTCACCAACTTTT
CATTGGCAATCTACCTCATGAGGTGGACAAATCAGAGCTTAAAGATTTCTTTCAAAAATATGGGAATGTGGTTGAGCTGC
GCATTAACAGTGGTGGGAAATTACCCAATTTTGGTTTTGTTGTGTTTGATGATTCTGAACCTGTTCAGAAGGTCCTCAGC
AACAGGCCCATCATGTTCAGAGGTGAGGTCCGTCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCCGAGAAGGGGACCG
GCGAGATAGCCGCCTACGGGGACCCGGAGGCCCTCGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCCCGTGGTGGCA
TGGTGCAGAAACCAGGATTTGGAGTGGGAAGGGGAGTTGCTCCAAGGCAGTGA

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006626 possible_ortholog 2 retrogenes
retro_cpor_1119, retro_cpor_464,
Dasypus novemcinctus ENSDNOG00000018758 ortholog_one2one 3 retrogenes
retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Homo sapiens ENSG00000145907 ortholog_one2one 1 retrogene
retro_hsap_2322,
Microcebus murinus ENSMICG00000012235 ortholog_one2one 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 ortholog_one2one 1 retrogene
retro_mputfur_625,
Oryctolagus cuniculus ENSOCUG00000022143 possible_ortholog 1 retrogene
retro_ocun_1352,
Otolemur garnettii ENSOGAG00000001726 ortholog_one2one 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 ortholog_one2one 1 retrogene
retro_pabe_2104,
Pan troglodytes ENSPTRG00000017438 ortholog_one2one 1 retrogene
retro_ptro_1696,
Rattus norvegicus ENSRNOG00000013186 possible_ortholog 1 retrogene
retro_rnor_1282,
Tarsius syrichta ENSTSYG00000004570 ortholog_one2one 1 retrogene
retro_tsyr_1391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_188 68.86 57.45
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2. retro_pvam_1188 79.34 64.47
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Download FASTA sequences of all ENSPVAG00000017250 retrocopies