Parental gene: | PDZD8, ENSSSCG00000010669 |
| Aliases: | None |
| Description: | PDZ domain containing 8 [Source:HGNC Symbol;Acc:26974] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 14:138801328..138903799(-) |
>ENSSSCG00000010669
ATGGGGCTGCTGCTCATGATCCTGGCATCGGCCGTGCTGGGCTCCTTCCTCACGCTCCTCACCCAGTTTCTGCTGCTTTA
CCGCAAACAGCCCTTGCCGCCACCGGACGAGGCCGCCCGCGCCGCCGAAGGCTTCCGCTACATCAAGCCGGTGCCGGGCC
TGGCCCTGCGGGAGTACCTTTATGGCGGCGGCGGGGCTGAGGAGCCCGCCGGCGGGTCCCCTGAGGGCGGCGCGACCCCG
ACCCCCGAGACCCCCGCCCCGCCGACGCGGGAGACCTGCTACTTCCTCAACGCCACCATTCTGTTCCTGTTCCGGGAGCT
GCGGGACACCGCGCTGGCCCGCCGCTGGGTCACCAAGAAGATCAAGGTGGAGTTCGAGGAGCTGCTGCAGACCAAGACGG
CCGGGCGCCTGCTGGAGGGGCTGAGCCTGCGGGACGTGTTCCTGGGCGAGACCGTGCCCTTCATCAAGACCATCCGGCTT
CTCCGGCCCGTGGTGCCCTCGGCCACCGGGGAGCCCGATGGCCCAGAAGGGGAGGCGCTACCCGCCACCTCCCCCGAGGA
GCTGGCTTTTGAGGCGGAGGTGGAGTACGACGGAGGCTTCCACTTGGCCATCGACGTGGACCTGGTCTTCGGCAAGTCCG
CCTACCTGTTCGTCAAGCTGTCCCGGGTGGAGGGGAGGCTGCGCTTCGTCCTCACCCGCGTGCCCTTCACCCACTGGTTC
TTCTCCTTCGTGGAGGACCCACTGATCGACTTCGAGGTGCGCTCCCAGTTCGAAGGGCGGCCCATGCCCCAGCTCACCTC
CATCATCGTCAACCAGCTCAAGAAAATCATCAAGCGCAAGCACACGCTGCCGAGTTACAAGATCAGGTTTAAGCCATTTT
TCCCATTCCAAACCTTGAAAGGATTTGAAGAAGAGGAAGAAGAGCATATCCATATACAACAGTGGGCACTTACTGAAGGC
CGCCTTAAAGTTACATTGCTAGAATGTAGCAGGTTACTTATTTTTGGATCCTATGATAGAGAGGCAAATATTCATTGCAC
ACTTGAGCTGAGCAGTGGCGTTTGGGAAGAGAAGCAAAGGAGTTCTATTAAGACGGTTGAATTAATAAAGGGGAATTTAC
AAAGTGTTGGACTTACACTTCGTCTTGTCCAGTCAACTGACGGGTATGCTGGGCACGTCATAATTGAGACAGTGGCCCCA
AACTCACCTGCTGCAGTTGCAGATCTTCAGCGGGGAGATCGCCTGATTGCGATTGGAGGCGTGAAAATCACATCTACACT
CCAAGTGTTGAAGCTTATCAAGCAGGCTGGCGACCGAGTCCTGGTGTATTATGAAAGGCCTGTTGGCCAGAGCAATCAGA
GTGTGGTGCTGCAGGATAACTTTGGACAGTTGGAAGAAAACTTTCTGTCAAGCTCATGCCAGCCAACCTATGAAGAAGAA
ACAACTGGGTTGGCAATAGATGCTGAAAATAGAGACCTGGATTCTGAATTTGAAGACTTGGCGAGTGATGTCAGAGCACA
AACTGAGGTCAAAGATGAGGCACAGTCATTAAGTCATAGTCCCAAACGTATTCCAACAACACTTTCTGTTAAACCTCTTG
GAACTATATCACCAGTTTTAAACCGGAAATTAGCTGTTGGAGGTCACCCGCCACCACCAAAACTTCCATCCAAAGAAGGG
CATAAATCCTTAGCCCTGAAATCTTCTGAGATAACAGAACCAGCACAAATGTCAAAACCCACCCAAGGATCCACTTTCAA
ACCACCTGTGCCACCACGACCGCAAGTCAAAATTCCTTTGCCTTCTGCTGACACCCCAAATCAGGCAGAACTAGATATTC
CTGTTGAAAAACCAGAGAAGGTGACTTTGCCACCACCTCTTACAGATAAACCTGCTGAAAAGCAAGTGAAAAATCTGGAT
CACGTGGAAGAAGCCACTGCCGCTAAACAGTTTTTAGCAAAGCAGGAAGTGGCAAAAGATTTGACTTCAGAAAGTTCTTG
CCCTCCTAAGGACAGCTCAGATGACCCTCAAACGTGGGAATCATCAGAAATTCCTTATCGTAATAAGCTAGGAAAATGGA
CAAGAACCAGAGCTAGCTGTTCTTTTGACATAGAAGCCTGCCACAGGTACTTAAACATTGCACTGTGGTGCAGGGATCCT
TTCAAATTAGGGGGTCTCATCTGCTTGGGGCATGTTAGTTTGAAACTTGAAGAGGTGGCTTTGGGATGCTTAGCCACATC
AAACATGGAATACCTTTCCAAATTCAGACTGGAAGCCCCATCACCTAAGGCCATGGTCACAAGAACCGCTCTACGCAACC
TGAGTGTACAAAAGGGATTCAATGACACATTTTGCTTCGGGGATATTACTGTTCACTTCAAGTATTTGAAAGAAGGAGAG
CCAGAGCACCATGTAGTTACTAACTTAGAGAAAGAAAAAGAACTCCATTTGGTCGAAGAGGTTTCTGCCCTGACTAAAGA
GGAGCACTTTGTTGGACAGACGGGTTTGACAGAAAATAAGCATAGTTTCCAAGATACTCAGTTCCAGAACCCAACTTGGT
GTGATTACTGTAAGAAGAAAGTTTGGACTAAAGCTGCCTCCCAGTGTATGTTCTGTGCTTATGTTTGCCATAAAAAATGT
CAGGAAAAGTGTCTAGCCGAGACTCCTCTTTGTGGAGCAACTGACCAGCGGATAGACAGAGCCCTGAAAAACCTCAGGCT
GGAAGGACAAGAAACCCTCTTAGGTCTGCCCCCTCGTGTTGATGCTGAAGCTGGCAAGTCAGTCAACAGAACAACAGGTT
TGACAAGACATATTATCAATACAAGCTCTCGTTTGTTAAATCTGCGTCAAGTCTCTAAAACTCGCCTTTCTGAGCCAGGA
ACTGATCTAGTAGAACCTTCACCAAAACACACACCCAACACATCAGACAACGAAGGCAGCGACACAGAGGTCTGTGGTCC
AAACAGTCCCTCTAAGCGGGGCAACAACACAGGAATAAAGTTAGTGAGAAAGGAGGGTGGTCTGGATGACAGTGTTTTCA
TTGCTGTTAAAGAAATCGGTCGTGATCTGTACAGGGGCTTGCCTACGGAGGAGAGGATCCAGAAACTAGAGTTCATGCTA
GATAAACTGCAGAATGAAATTGATCAGGAGTTGGAACATAACAATTCCCTTGTTAGAGAAGAAAAAGAGACAACTGATTC
GAGGAAAAAATCAATTCTTTCTGCGGCTTTGGCTAAATCAGGTGAAAGACTGCAAGCTCTAACACTTCTCATGATCCACT
ATAGAGCAGGCATTGAAGATGTCGAATCTTTAGAAAGTCTCTCTCTAGATCAGCACTCCAAAAAAATAAGCAAGTATACA
GATGATACAGAAGAAGACCTAGATAATGAAATAACCCAACTAATAGACTCTCAGCCATTCAGTAGCATACCAGATGACTT
ATTTGGCCCTTCTGAGTCTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 19 .25 RPM |
| SRP014902_testis | 29 .56 RPM |
| SRP018288_heart | 40 .52 RPM |
| SRP018288_kidney | 18 .22 RPM |
| SRP018288_liver | 8 .00 RPM |
| SRP018288_lung | 46 .94 RPM |
| SRP018856_adipose | 34 .14 RPM |
| SRP035408_brain | 13 .28 RPM |
| SRP035408_liver | 4 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Pongo abelii | ENSPPYG00000002691 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_234 | 69.89 | 53.99 | Please wait, loading  |
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Download FASTA sequences of all ENSSSCG00000010669 retrocopies