Parental gene:

ENSSSCG00000020689

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:109395076..109405328(+)


>ENSSSCG00000020689
ATGGCCCGGACTATGGAACCACTGGCAAAGAAGATCTTTAAAGGAGTTTTAGTAGCTGAACTTGTGGGCATTTTTGGAGC
ATATTTTTTGTTTAAAAAGATGAACACAAGCCAAGATTTCAGGCAAACAATGAGCAAGAAGTTTCCCTTCATCTTGGAAG
TTTATTACAAATCCATTGAACAGTCTGGGATGTACGGAATCAGAGAGCAAGATCAAGAAAAATGGCTGAACAGCAAAAAT
TAA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .16 RPM
SRP014902_testis 16 .97 RPM
SRP018288_heart 128 .98 RPM
SRP018288_kidney 46 .99 RPM
SRP018288_liver 21 .59 RPM
SRP018288_lung 29 .22 RPM
SRP018856_adipose 26 .75 RPM
SRP035408_brain 23 .06 RPM
SRP035408_liver 18 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017579 ortholog_one2one 1 retrogene
retro_amel_629,
Choloepus hoffmanni ENSCHOG00000013008 ortholog_one2many 2 retrogenes
retro_chof_328, retro_chof_49,
Felis catus ENSFCAG00000023228 ortholog_one2one 2 retrogenes
retro_fcat_1289, retro_fcat_1750,
Homo sapiens ENSG00000218739 ortholog_one2one 2 retrogenes
retro_hsap_2312, retro_hsap_4294,
Gorilla gorilla ENSGGOG00000025368 ortholog_one2one 2 retrogenes
retro_ggor_1755, retro_ggor_2869,
Mus musculus ENSMUSG00000062691 ortholog_one2one 2 retrogenes
retro_mmus_426, retro_mmus_509,
Pongo abelii ENSPPYG00000029876 ortholog_one2one 2 retrogenes
retro_pabe_2045, retro_pabe_3499,
Pan troglodytes ENSPTRG00000033858 ortholog_one2one 2 retrogenes
retro_ptro_1687, retro_ptro_2911,
Rattus norvegicus ENSRNOG00000040303 ortholog_one2one 2 retrogenes
retro_rnor_1144, retro_rnor_973,
Tursiops truncatus ENSTTRG00000006884 ortholog_one2one 7 retrogenes
retro_ttru_1069, retro_ttru_1866, retro_ttru_1946, retro_ttru_274, retro_ttru_526, retro_ttru_57, retro_ttru_832,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_328 71.67 75.00
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2. retro_sscr_434 83.13 100.00
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Download FASTA sequences of all ENSSSCG00000020689 retrocopies