Parental gene:

PPIL1, ENSSSCG00000030390

Aliases:None
Description:peptidylprolyl isomerase (cyclophilin)-like 1 [Source:HGNC Symbol;Acc:9260]
Organism:Pig (Sus scrofa)
Coordinates:7:37424433..37448185(-)


>ENSSSCG00000030390
ATGGCGGCTATCCCTCCAGACTCCTGGCAGCCCCCCAACGTATACTTGGAGACCAGCATGGGGATCATTGTGCTGGAGCT
GTACTGGAAGCATGCTCCAAAGACCTGTAAGAACTTCGCTGAATTGGCTCGTCGAGGTTACTACAATGGTACCAAATTCC
ACAGAATCATCAAAGACTTTATGATCCAGGGAGGTGACCCAACAGGAACAGGTCGAGGTGGTGCATCTATCTATGGCAAG
CAGTTTGAAGATGAACTTCATCCCGACTTGAAATTCACAGGGGCTGGAATTCTCGCAATGGCCAATGCAGGGCCAGACAC
CAACGGCAGCCAGTTCTTTGTGACCCTGGCTCCCACGCAGTGGCTTGATGGCAAACACACCATTTTTGGCCGTGTGTGCC
AGGGGATAGGGATGGTGAATCGAGTAGGAATGGTGGAAACAAACTCCCAAGACCGCCCCGTGGACGATGTGAAGATCATT
AAGGCGTACCCTTCTGGGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 9 .82 RPM
SRP014902_testis 22 .91 RPM
SRP018288_heart 8 .88 RPM
SRP018288_kidney 20 .19 RPM
SRP018288_liver 13 .11 RPM
SRP018288_lung 18 .33 RPM
SRP018856_adipose 19 .82 RPM
SRP035408_brain 19 .37 RPM
SRP035408_liver 22 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000213 ortholog_one2many 1 retrogene
retro_amel_30,
Bos taurus ENSBTAG00000002376 ortholog_one2one 1 retrogene
retro_btau_854,
Choloepus hoffmanni ENSCHOG00000006001 ortholog_one2one 1 retrogene
retro_chof_250,
Callithrix jacchus ENSCJAG00000016094 ortholog_one2one 1 retrogene
retro_cjac_1302,
Erinaceus europaeus ENSEEUG00000009371 ortholog_one2one 1 retrogene
retro_eeur_204,
Homo sapiens ENSG00000137168 ortholog_one2one 1 retrogene
retro_hsap_2086,
Gorilla gorilla ENSGGOG00000027071 ortholog_one2one 1 retrogene
retro_ggor_1630,
Loxodonta africana ENSLAFG00000028161 ortholog_one2one 2 retrogenes
retro_lafr_1187, retro_lafr_435,
Macropus eugenii ENSMEUG00000000997 ortholog_one2one 1 retrogene
retro_meug_1008,
Myotis lucifugus ENSMLUG00000002299 ortholog_one2many 1 retrogene
retro_mluc_69,
Monodelphis domestica ENSMODG00000013502 ortholog_one2one 2 retrogenes
retro_mdom_500, retro_mdom_997,
Mustela putorius furo ENSMPUG00000014166 ortholog_one2many 1 retrogene
retro_mputfur_29,
Nomascus leucogenys ENSNLEG00000010779 ortholog_one2one 1 retrogene
retro_nleu_2135,
Oryctolagus cuniculus ENSOCUG00000007046 ortholog_one2one 2 retrogenes
retro_ocun_1493, retro_ocun_1759,
Otolemur garnettii ENSOGAG00000011275 ortholog_one2one 3 retrogenes
retro_ogar_1484, retro_ogar_2850, retro_ogar_939,
Ochotona princeps ENSOPRG00000006059 ortholog_one2one 3 retrogenes
retro_opri_1054, retro_opri_238, retro_opri_641,
Procavia capensis ENSPCAG00000015572 ortholog_one2one 1 retrogene
retro_pcap_426,
Pongo abelii ENSPPYG00000016554 ortholog_one2one 1 retrogene
retro_pabe_2009,
Pan troglodytes ENSPTRG00000018111 ortholog_one2one 1 retrogene
retro_ptro_1535,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_472 86.23 100.00
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Download FASTA sequences of all ENSSSCG00000030390 retrocopies