Parental gene: | hmgcl, ENSXETG00000015336 |
| Aliases: | None |
| Description: | 3-hydroxymethyl-3-methylglutaryl-CoA lyase [Source:Jamboree;Acc:XB-GENE-1002069] |
| Organism: | Xenopus (Xenopus tropicalis) |
| Coordinates: | GL172739.1:2570159..2578211(-) |
>ENSXETG00000015336
ATGGCTATCTTTTCCGCTGGGTTCCCATTCGGGTCCTTAGGCTTTGTAAAAAGCCGGCAACTCAGTTCCCTGCCAATACA
ATCATTCCCTAAAGAGGTAAAGGTTGTGGAAGTTGGACCCAGGGATGGACTGCAAAATGAAAAGACAGTTGTCCCATCTG
AAGTGAAAATTCATCTCATTAACCTGTTATCTGAAGCAGGGCTTCAAGCTATTGAAGCCACCAGCTTTGTCTCTCCTAAA
TGGGTGCCTCAGATGGCCGATCATAAAAATGTCATTCAGGGAATAAAGAAGTACCCAAATGTAACCTACCCAGTCCTTAC
TCCAAATCTTACTGGATTTCAAGCTGCGGTTGAATGTGGTGCAAAGGAAGTAGCCATATTTGGAGCTGCATCAGAGCTCT
TTAGCAAGAAGAACATTAACTGTTCTATTGATGAAAGTTTGCAAAGATTCAAGGATGTTATTGCAGCAGCTAAGGAAGCA
AACATCCCAGTGCGAGGGTATGTTTCATGTGTTCTTGGATGCCCATATGAAGGCAAGGTAGCTCCTAGTAAAGTGGCTGA
AGTGGCATACAAGATGTTTTCTATGGGCTGCTATGAGATCTCTTTGGGTGACACGATTGGAGTGGGAACTCCTGGCGGTA
TGAGGGACATGCTGAGAGCTGTGTTGGATGTTGTTCCAGCCAAAGCTCTGGCTGTTCATTGCCATGACACATATGGACAG
GCACTGGCAAATATACTAGTTGCATTGCAGATGGGAGTGCAGGTTGTTGATGCTTCAGTTGCAGGTTTGGGAGGATGCCC
ATATGCTCAGGGAGCTTCAGGGAATGTGGCAACTGAAGATGTTGTGTATATGCTGCATGGTCTTGGAATTCAAACAGGTA
TTGACATAAAGAAACTGACAGAAGCTGGAGCTTTTATCTGCAAAGCACTAGGAAAGAAGAGCAACTCAAAAGTGGCTCAA
GCAATGTGCAAGCTTTAA
ATGGCTATCTTTTCCGCTGGGTTCCCATTCGGGTCCTTAGGCTTTGTAAAAAGCCGGCAACTCAGTTCCCTGCCAATACA
ATCATTCCCTAAAGAGGTAAAGGTTGTGGAAGTTGGACCCAGGGATGGACTGCAAAATGAAAAGACAGTTGTCCCATCTG
AAGTGAAAATTCATCTCATTAACCTGTTATCTGAAGCAGGGCTTCAAGCTATTGAAGCCACCAGCTTTGTCTCTCCTAAA
TGGGTGCCTCAGATGGCCGATCATAAAAATGTCATTCAGGGAATAAAGAAGTACCCAAATGTAACCTACCCAGTCCTTAC
TCCAAATCTTACTGGATTTCAAGCTGCGGTTGAATGTGGTGCAAAGGAAGTAGCCATATTTGGAGCTGCATCAGAGCTCT
TTAGCAAGAAGAACATTAACTGTTCTATTGATGAAAGTTTGCAAAGATTCAAGGATGTTATTGCAGCAGCTAAGGAAGCA
AACATCCCAGTGCGAGGGTATGTTTCATGTGTTCTTGGATGCCCATATGAAGGCAAGGTAGCTCCTAGTAAAGTGGCTGA
AGTGGCATACAAGATGTTTTCTATGGGCTGCTATGAGATCTCTTTGGGTGACACGATTGGAGTGGGAACTCCTGGCGGTA
TGAGGGACATGCTGAGAGCTGTGTTGGATGTTGTTCCAGCCAAAGCTCTGGCTGTTCATTGCCATGACACATATGGACAG
GCACTGGCAAATATACTAGTTGCATTGCAGATGGGAGTGCAGGTTGTTGATGCTTCAGTTGCAGGTTTGGGAGGATGCCC
ATATGCTCAGGGAGCTTCAGGGAATGTGGCAACTGAAGATGTTGTGTATATGCTGCATGGTCTTGGAATTCAAACAGGTA
TTGACATAAAGAAACTGACAGAAGCTGGAGCTTTTATCTGCAAAGCACTAGGAAAGAAGAGCAACTCAAAAGTGGCTCAA
GCAATGTGCAAGCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 11 .91 RPM |
| SRP007412_skeletal_muscle | 13 .50 RPM |
| SRP007412_heart | 43 .93 RPM |
| SRP007412_kidney | 43 .93 RPM |
| SRP007412_liver | 18 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Sorex araneus | ENSSARG00000014017 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_xtro_52 | 55.48 | 92.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSXETG00000015336 retrocopies