RetrogeneDB ID: | retro_acar_32 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | GL343304.1:558792..560001(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSACAG00000011253 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSACAG00000001349 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_32
GGCGCCGAGGAGATCGTGGAAGTGGTGGACCTGGAGCCGCCTGGGCCCGATGATCTGGCTGGTGAGATGGAAGATGTGGA
TCTCGATGAAGAACAGGGCGCTTGGGTGACTGAAGAGGAGGATGAGGGAGTAGAAGAGGGCATGGCGGCCCAAGATGACA
GCGAGGTCACCTTCTCAAAACATACTGCTTCTGTTTTCTGTGTCAGCCTTGATCCCAAGACTAACACGCTGGCAGTGACA
GGTGGTGAAGATGACAAGGCCTTTGTGTGGCGCCTCAGTGATGGAGAACTCCTTTTTGAATGCTCAGGTCATAAAGACTC
TGTCACATGTACTGGGTTTAGCCATGACTCCACCTTTGTGGCTACAGGTGACATGAGCGGATTGATCAAAGTCTTGACCA
AAGAGGAGATCTGGTCTTTTGAAGTGGGTGACTTGGAGTGGATGGAGTGGCACCCTCAATCCCATATCCTTCTGGCTGGA
ACAGCAGATGGAAACTCCTGGATGTGGAAAATCCCCAGTGGGGAATGCAAGACGTTCCAAGGGCCAAACTGCCCTGCTAC
CTGTGGACGTGTCCTTTCCGATGGAAAGAGAGCTGTGGTTGGCTATGAAGATGGAACAGTTCGCATCTGGGATCTGAAGC
AGGGGAGTCCACTACATGTCCTTAAAGGTCAGGATGGTCATCAGGGCCCTTTGACATGTGTGGCCAGCAATAAGGATGGC
AGCCTAATCCTGACAGGTTCTGTTGACTGCCATGCCAAGCTGGTGAACTCTGCAACGGGCAAGGTTGTGTCTGTGTTCAA
GGCAGAGAGCATTGTCCCCAAGCCTTCAGTGGGAGAGACTGAGGAGGCTGAATCCAACTCAGTGGAGTCGCTGGGTTTCT
GCAATGTGATGCCACTGGCAGCTGTTGGCTATTTAGATGGGACCTTGGCCATTTATGACCGTGCTACCCAGACCTTAAGA
CACAAGTGCCAGCATGAGTCAGGGATTGTACAGCTCCTGTGGGAGGACAGCTCACCTGTGGTTTATACCTGCAGCCTAGA
TGGGGCTGTGTCCCTCTGGGATGCCCGTTCAGGAAAGTTGATCAGTGAGTACCGGGGCTACTCAGCAGAAATCCTGGACT
TGGCTTTGTACAAAGATGCTTCCATTGTAGTTACTACTTCCGGCGATCACCAGGCCAAGGTGTTCTGTGTGCAGCGCCCA
GATCGCTAA
ORF - retro_acar_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 96.79 % |
| Parental protein coverage: | 93.1 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGMEAQDDSEVTFSKHTASVFCVSL |
| GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGM.AQDDSEVTFSKHTASVFCVSL | |
| Retrocopy | GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGMAAQDDSEVTFSKHTASVFCVSL |
| Parental | DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKVWRVDTKEEI |
| DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKV....TKEEI | |
| Retrocopy | DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKVL---TKEEI |
| Parental | WSFDVGDLEWMEWHPQSHVLLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV |
| WSF.VGDLEWMEWHPQSH.LLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV | |
| Retrocopy | WSFEVGDLEWMEWHPQSHILLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV |
| Parental | RIWDLKQGSPVHVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV |
| RIWDLKQGSP.HVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV | |
| Retrocopy | RIWDLKQGSPLHVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV |
| Parental | GETEETESNSVESLGFCNVMPLAAVGYLDGTLAIYDLATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD |
| GETEE.ESNSVESLGFCNVMPLAAVGYLDGTLAIYD.ATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD | |
| Retrocopy | GETEEAESNSVESLGFCNVMPLAAVGYLDGTLAIYDRATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD |
| Parental | GAVSLWDARSGKLISEYRGHSAEILDFALNKDASIVVTTSGDHQAKVFCVQRPDR |
| GAVSLWDARSGKLISEYRG.SAEILD.AL.KDASIVVTTSGDHQAKVFCVQRPDR | |
| Retrocopy | GAVSLWDARSGKLISEYRGYSAEILDLALYKDASIVVTTSGDHQAKVFCVQRPDR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .98 RPM | 16 .61 RPM |
| SRP009831_brain | 1 .99 RPM | 15 .72 RPM |
| SRP009831_dewlap | 1 .77 RPM | 17 .21 RPM |
| SRP009831_embryo | 2 .85 RPM | 30 .88 RPM |
| SRP009831_heart | 3 .06 RPM | 25 .84 RPM |
| SRP009831_liver | 1 .27 RPM | 12 .64 RPM |
| SRP009831_lung | 1 .81 RPM | 14 .81 RPM |
| SRP009831_ovary | 2 .01 RPM | 19 .42 RPM |
| SRP009831_skeletal_muscle | 2 .26 RPM | 18 .50 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_32 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_32 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000001349 | 1 retrocopy |
retro_acar_32 ,
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