RetrogeneDB ID: | retro_acar_77 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | 2:11722021..11722282(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSACAG00000025906 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_77
ATTGTATTGTTGGTGCATAGATGTTGTGTCTGTGGGGATGATTTAGGTTTCAATTTTTATTTTTTATATATATACATATA
TTTTCTTTTTTTCTGTTTTTGTTTTGTTCTCTCTTTCTTTCAATTTAGTTTATTTATCTCTTCCTCAGACATACACCCAA
ATACACACACACACACATTTGTACATGTAATCCATGTTATTGTTCATTACTTGTTTTTTTGCACAATGGTATGTCTGTAT
GTTCTTCACTTATGTTACATG
ORF - retro_acar_77 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.69 % |
| Parental protein coverage: | 98.86 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | IVLLVHRCCVCGDDLGFNLYFIYINF-ILFSVIIVFYCINLLVFFIFYWVARRPSWRSVR-YFFLFLFFV |
| IVLLVHRCCVCGDDLGFN.YF.YI...I.......F....L...FI.......P...............V | |
| Retrocopy | IVLLVHRCCVCGDDLGFNFYFLYIYI<IFSFFLFLFCSLFLSI*FIYLFLRHTPKYTHTH>FVHVIHVIV |
| Parental | FCLFFCTMVCLYVLHLCYM |
| ..LFFCTMVCLYVLHLCYM | |
| Retrocopy | HYLFFCTMVCLYVLHLCYM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .13 RPM | 0 .00 RPM |
| SRP009831_brain | 0 .05 RPM | 0 .00 RPM |
| SRP009831_dewlap | 0 .00 RPM | 0 .00 RPM |
| SRP009831_embryo | 0 .03 RPM | 0 .03 RPM |
| SRP009831_heart | 0 .00 RPM | 0 .00 RPM |
| SRP009831_liver | 0 .04 RPM | 0 .04 RPM |
| SRP009831_lung | 0 .10 RPM | 0 .05 RPM |
| SRP009831_ovary | 0 .00 RPM | 0 .00 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_77 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_77 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000025906 | 1 retrocopy |
retro_acar_77 ,
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