RetrogeneDB ID: | retro_amel_1039 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192851.1:717344..717711(+) | ||
| Located in intron of: | ENSAMEG00000011862 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ETFB | ||
| Ensembl ID: | ENSAMEG00000014360 | ||
| Aliases: | None | ||
| Description: | electron-transfer-flavoprotein, beta polypeptide [Source:HGNC Symbol;Acc:3482] |
Retrocopy-Parental alignment summary:
>retro_amel_1039
GACTGTAAGCAGACAGGGCAGATGACAGCTGGATTTCTAGACTGGCCACAGGGCACATTCACCTTCCAGGTGACACTGGA
AGGGTCAAGGTGAAAGTGGAGTGGGAGATTGATGGGGCCCTGGAGACCCTGCGCCTGAAGCTGCCTGCTGTGGTGATCGC
CGACCTGCAGCTCAACAAACCCTGCTGTGTCATATTGCCCAACATCATGAAAGCCAAGGACATTAACAAATCAAACCAGG
AGACCTGAGTATCTACCTGACCTCCAAGCTCTCTGTGGTTAGTGTGGAGGACCCACCCCTGCGTATAGCTGGCATCGGGG
TGACCACAGAGGACTTGGTGGCCAAGCTGAGGGAGACTGGGTGGATT
ORF - retro_amel_1039 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.44 % |
| Parental protein coverage: | 52.72 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | DCNQTGQMTAGLLDWPQGTFASQVTLEGD-KLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNI |
| DC.QTGQMTAG.LDWPQGTF..QVTLEG..K.KVE.EIDG.LETLRLKLPAVV.ADL.LN.P....LPNI | |
| Retrocopy | DCKQTGQMTAGFLDWPQGTFTFQVTLEGS<KVKVEWEIDGALETLRLKLPAVVIADLQLNKPCCVILPNI |
| Parental | MKAKKKKIEV-IKPTDLGVDLTSKLSVVSVEDPPQRMAGVKVETTEDLVAKLREIGRI |
| M..K.K.I...IKP.DL...LTSKLSVVSVEDPP.R.AG..V.TTEDLVAKLRE.G.I | |
| Retrocopy | M--KAKDINK<IKPGDLSIYLTSKLSVVSVEDPPLRIAGIGV-TTEDLVAKLRETGWI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1039 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1039 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000014360 | 1 retrocopy |
retro_amel_1039 ,
|
| Tursiops truncatus | ENSTTRG00000003974 | 1 retrocopy | |
| Xenopus tropicalis | ENSXETG00000022222 | 1 retrocopy |