RetrogeneDB ID: | retro_amel_1510 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL193528.1:218616..219559(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DBNL | ||
| Ensembl ID: | ENSAMEG00000017502 | ||
| Aliases: | None | ||
| Description: | drebrin-like [Source:HGNC Symbol;Acc:2696] |
Retrocopy-Parental alignment summary:
>retro_amel_1510
CTCTTTACCCATGAGGGTAACAGCAATGACATCCATGTGGCCGGCACTGGGGAGAGTGCCTGGAGGAGATGGTGGAGGAG
CTCAACAGCGGGAAGCTGATGTACACTTTCTGCAGGGTGAAGAATCCCAAGTCTGGCCTGCCCAAGTTTGTCCTCATCAA
CTGGACAGGTGAGGGTGTAAACTATGTGCAGAAGGGAGCGTGCACCAAGCATGTCATCATTATGGCCAGCTTTCTGAAGG
GGGTCTGTGTGACTGTCAACGCAAGGACCAAGAAACACACAGAGCCTGAGTGCCTCATGCAGAAGGTGGTCAGGGCCTCT
GGTGCCAACAGTGCCTTCCACAGGGAGAGCAGCTGTTTCTAGGACATGGGCCCCTAGGTCCCAGTGGGCTCTGTACCAGA
AGACCAATGCCATATCTGAGATCAAAAGGGTTGGCAGAGACCGCTTCTGGGCCAAAGCAGAGAAGGAGGAGGAGAACCGC
AGGCTGGAGGAGAAGCGGTGGGGAGAGGAGGAGTGGCAGCCGCCGGGGAGCACCGGGAGCAGCAGCTGCGAGAGGCCTCC
CACCCGGAGTAGTGCTATTGGGAGGAGCAGGGCAGTGAGGCTGGACCCCAGAGGAAGTGTGAGCAGAAGGAAGTGGTTTC
AAGGAACACAGAGGAGCTTGAGTCTGCTTGTCAGCAGCCAACACACACATAGGAGATCTTCAAGCAGAAGGAGAGGGCCA
TGTCCATCACATCTGTCTCCAGCCCTAGCCAGGCAAACTGAGGGGTCCCTTCCTGCAGAAGCAGCCCACCCAAGCAGAGA
CCCACCTCAGCTGAGCGCTGCCCCAAGCCTTCTCAAGGCCCAGGGCAGATCTCCGCTAGGAGCCAGCACCCAGCACTCTT
GTGTGTCTGGTGCAGATGGGAGAGGAGGCCCCAGAGCAGGAGACTGTCTATGAGAAGGCCCTG
ORF - retro_amel_1510 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.24 % |
| Parental protein coverage: | 79.17 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | LFTYEGNSNDIRVAGTGEGG-LEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACA |
| LFT.EGNSNDI.VAGTGE...LEEMVEELNSGK.MY.FCRVK.P.SGLPKFVLINWTGEGVN.V.KGAC. | |
| Retrocopy | LFTHEGNSNDIHVAGTGESA<LEEMVEELNSGKLMYTFCRVKNPKSGLPKFVLINWTGEGVNYVQKGACT |
| Parental | NHVSTMASFLKGAHVTINARAEEDVEPECIMQKVARASGANYAFHKESGRFQDTG-PQAPVG-SVYQKTN |
| .HV..MASFLKG..VT.NAR.....EPEC.MQKV.RASGAN.AFH.ES..F.D.G.P..P.G...YQKTN | |
| Retrocopy | KHVIIMASFLKGVCVTVNARTKKHTEPECLMQKVVRASGANSAFHRESSCF*DMG<PLGPSG<ALYQKTN |
| Parental | AISEIKRVGKDSFWAKAEKEEENRRLEEKRRAEEERQR-LEQERRERELREAARREQRYREEPGSEAGPQ |
| AISEIKRVG.D.FWAKAEKEEENRRLE...R..EE.......E.RE..LREA...E..Y.EE.GSEAGPQ | |
| Retrocopy | AISEIKRVGRDRFWAKAEKEEENRRLE-EKRWGEEEWQ<AAGEHREQQLREASHPE*CYWEEQGSEAGPQ |
| Parental | SRKSEQQEVISRSREEQVRLGCSPLPHPPTHPREIFKQKERAMSTTSISSPQ-PGKLRSPFLQRQLTQPE |
| .RK.EQ.EV.SR...E.....C......PTH..EIFKQKERAMS.TS.SSP..PGKLR.PFLQ.Q.TQ.E | |
| Retrocopy | -RKCEQKEVVSRNT-EELESACQQ----PTHT*EIFKQKERAMSITSVSSPS<PGKLRGPFLQKQPTQAE |
| Parental | THHSAEPTQASSRPRADVREEPVPSTPPCPAQAEEEAVYEEPPEQETL |
| TH.S....QA.SRPRAD.R.EP.PST..C..Q..EEA...E......L | |
| Retrocopy | THLS*ALPQAFSRPRADLR*EPAPSTLVCLVQMGEEAPEQETVYEKAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1510 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1510 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017502 | 1 retrocopy |
retro_amel_1510 ,
|
| Tupaia belangeri | ENSTBEG00000004139 | 1 retrocopy |