RetrogeneDB ID: | retro_amel_1564 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193628.1:62762..63262(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000007808 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000001463 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.95 % |
Parental protein coverage: | 66.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DVVRRLLSLEMANQKEKLKIKQELLMNKILANPEDTNSLEARIVALTVKIRSYEEHMQKHRKDKAHKRYL |
D.VRRLLSLEMAN.KEKLK.KQE.LMNKI.ANPEDT.SLEA.IV.LTVKI..YEEH.QKHR.D...K.YL | |
Retrocopy | DHVRRLLSLEMANKKEKLKFKQEQLMNKIVANPEDTTSLEAQIVTLTVKIHNYEEHVQKHRND---KHYL |
Parental | LMSIDQRKKMLK-NLRKTNYSVFEKTCKELGIEYTSPPLYNRKGHQRWAAKKALCIRVFQEVQKLKKQKR |
LMSIDQRKKMLK.N..KTNYSVFEK.CKEL.IEYT.PPLY..KGHQ.WA.KK.LCIRVFQEVQKLKK.KR | |
Retrocopy | LMSIDQRKKMLK<NPHKTNYSVFEKPCKELEIEYTFPPLYHQKGHQHWATKKTLCIRVFQEVQKLKKYKR |
Parental | ALKAKAAAQKQGQKNPESPSKAGPEAIEENQ |
A.KA.AA.QKQ.QKNPESPSKA..EAI.EN. | |
Retrocopy | AIKARAASQKQDQKNPESPSKAVLEAIKENK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001463 | 1 retrocopy |
retro_amel_1564 ,
|
Canis familiaris | ENSCAFG00000030390 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001852 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000010877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007581 | 1 retrocopy | |
Felis catus | ENSFCAG00000005265 | 1 retrocopy | |
Homo sapiens | ENSG00000116898 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006475 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028861 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011467 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002656 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001537 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000541 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026393 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000608 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000958 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008948 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002345 | 1 retrocopy |