RetrogeneDB ID: | retro_amel_1647 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL193839.1:260255..260609(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | URAHP | ||
| Ensembl ID: | ENSAMEG00000001449 | ||
| Aliases: | None | ||
| Description: | urate (hydroxyiso-) hydrolase, pseudogene [Source:HGNC Symbol;Acc:43695] |
Retrocopy-Parental alignment summary:
>retro_amel_1647
ATGGAGCTGGTAAGCAGCCCACTGACCACGCACGTGCTGGACACTCCCTCAGGGTTCCCAGCCCAGGGCCCCTACCTCCA
TCTCTTCAGGTTTGAGAACCATGGCCAGTAGAGGACAGAGCTGAGGAAAAGCTACACCGACTATGATGGCTGCTGCCCAA
GTCTCCTGGCACCAGGCCCTTTGAAGGCAGGCAATTACAAGCTATCCTTTGACACCAAGGGCTACTGGAAGAAGAGGGGG
GCGGAGAGTTTCTATTCATATGTGGAAGTAGCTTTCACCATCACCAATGAGACCCATAGATTCTGTGCATCCCTGCTGCT
GAGCCTGTGGTCCTATATCACATATCAAGGGAGC
ORF - retro_amel_1647 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.73 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MESTSSPLTTHVLDTASGLPAQGLCLCLSRLEDHGQQWMELRKSYTDSDGRCPGLLPPGPVKAGTYKLSF |
| ME..SSPLTTHVLDT.SG.PAQG..L.L.R.E.HGQ...ELRKSYTD.DG.CP.LL.PGP.KAG.YKLSF | |
| Retrocopy | MELVSSPLTTHVLDTPSGFPAQGPYLHLFRFENHGQ*RTELRKSYTDYDGCCPSLLAPGPLKAGNYKLSF |
| Parental | DTEGYWKKRGQESFYPYVEVVFTITDETRRFHVPLLLSPWSYTTYRGS |
| DT.GYWKKRG.ESFY.YVEV.FTIT.ET.RF...LLLS.WSY.TY.GS | |
| Retrocopy | DTKGYWKKRGAESFYSYVEVAFTITNETHRFCASLLLSLWSYITYQGS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1647 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1647 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001449 | 1 retrocopy |
retro_amel_1647 ,
|