RetrogeneDB ID: | retro_amel_1864 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL194948.1:26022..26649(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GALE | ||
| Ensembl ID: | ENSAMEG00000009764 | ||
| Aliases: | None | ||
| Description: | UDP-galactose-4-epimerase [Source:HGNC Symbol;Acc:4116] |
Retrocopy-Parental alignment summary:
>retro_amel_1864
ATAGTAGAGAAGGTACTGGTGACAGGCCAGGCTGGTTAAATCAGCAGCCACATGGTGCTGGACATGCAGGGGGCTGGCTA
TTTCTTTGTGGGAATGAGCAACTTCCATAATGCTATCTGTGGAAGGGGCTCCATGCTGGAGAGCCTGTATTGGGTTCAGG
AGCTGACAGGCTGCTCTTTGAAGTTTGTGGAGATGGACATCTTGGACCAAGCAGCCCTGTAGCATCCCTTCAAAGAAGCA
CAGCTTTATGGAAGTCATCCACTTTGTGGGCCTCAAGGTTGTGGAAGAATCAGTCCTGAAACCTCTGGATTATTACAGAG
TTAAACTGACAGGAACTATCCAGCTTCTGGAGATCATGAGGGCCCATGGAGTGAAGAGCCTGGTGTTTGGCAACTCAGCC
ATCACATACAGGAACCCCTAGTATCTTCCCCTGGATGGGGCCTACCCCACAGGTGGCTATACCAACCCCTACTTCAAGTC
CCAATTATTCACTGAGGAAATGATCCTAGACCTGTGTCAGGCAGACTGGAATTCAGTGCTGCTGCAATATTTCAACCCCA
TGGGTGCCCATGTTTCAGGCTGCATTGGTGAGGATACCCAGGCATACCTAACAACCTCCTGCCCTAT
ORF - retro_amel_1864 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.36 % |
| Parental protein coverage: | 60.46 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAIRGRGSMPESLQRVQELTGRLVEFEEMDILDQ |
| ..EKVLVTG.AG.I.SH.VL....AGY..V...NFHNAI.GRGSM.ESL..VQELTG....F.EMDILDQ | |
| Retrocopy | IVEKVLVTGQAG*ISSHMVLDMQGAGYFFVGMSNFHNAICGRGSMLESLYWVQELTGCSLKFVEMDILDQ |
| Parental | AALQRLFK-KHSFTAVIHFAGLKAVGESVQKPLDYYRVNLTGSIQLLEIMRAHGVKNLVFSSSATVYGNP |
| AAL...FK.KHSF..VIHF.GLK.V.ESV.KPLDYYRV.LTG.IQLLEIMRAHGVK.LVF..SA..Y.NP | |
| Retrocopy | AAL*HPFK>KHSFMEVIHFVGLKVVEESVLKPLDYYRVKLTGTIQLLEIMRAHGVKSLVFGNSAITYRNP |
| Parental | QYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAWNAVLLRYFNPTGAHASGCIGEDPQ-GVPNNL |
| .YLPLD.A.PTGG.TNPY.KS..F.EEMI.DLCQAD..WN.VLL.YFNP.GAH.SGCIGED.Q.G.PNNL | |
| Retrocopy | *YLPLDGAYPTGGYTNPYFKSQLFTEEMILDLCQAD--WNSVLLQYFNPMGAHVSGCIGEDTQ<GIPNNL |
| Parental | MPY |
| .PY | |
| Retrocopy | LPY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1864 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1864 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009764 | 1 retrocopy |
retro_amel_1864 ,
|