RetrogeneDB ID: retro_amel_1884

Retrocopy location

• Organism: Panda (Ailuropoda melanoleuca)
• Coordinates: GL195160.1:70757..71097(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSAMEG00000003971
• Aliases: None
• Description: None

Sequence

>retro_amel_1884
TGTTTGAATGGCTGGATTGGCTACCTGGGAAAGTGCTTCTATTTTTCTGAAAATACAAGAACCTGGACAGCAAGCCAGAA
CTTCTGTGCCTTTCATGCAGCCACTCTTGCTGTCTACAACACCACAAAGAACTGGATTTCCTGAAACGATATTCTGACCA
TTCTCAATATTGGATTGGATTGAGTCGAGAAACAGGACAGACCTGGAAGTGGATAGATGGAACCATATACAGTGGTTGGT
TTAAAATAATTGGAATTGGAGAATGCGCCTATCTACACAAAATTGGAATTAGCAGAGCCAGTACACATTGGTTAGAAAAT
GGATTCGCAGCAAACCAGAC

Alignment

ORF - retro_amel_1884 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.72 %
• Parental protein coverage: 99.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  CLNGWIGYLGKCFYFSENTRTWAASQNFCAPHAATLAVFNTT-KELDFLKQYSNHSQYWIGLSPCSPNPL
          CLNGWIGYLGKCFYFSENTRTW.ASQNFCA.HAATLAV.NTT.KELDFLK.YS.HSQYWIGLS.......
Retrocopy CLNGWIGYLGKCFYFSENTRTWTASQNFCAFHAATLAVYNTT<KELDFLKRYSDHSQYWIGLSRETGQTW

Parental  PFIFLSVFCFRFKIIGIGECAYLHKIGISSASSH-LVRKWICSKPD
          ..I........FKIIGIGECAYLHKIGIS.AS.H.LVRKWI.SKPD
Retrocopy KWIDGTIYSGWFKIIGIGECAYLHKIGISRASTH<LVRKWIRSKPD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_amel_1884 retrocopy.

TSS

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab

retro_amel_1884 was not experimentally validated.

Homology

Retrocopy orthology:

Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003971	1 retrocopy	retro_amel_1884 ,