RetrogeneDB ID: | retro_amel_61 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL194116.1:327906..328692(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSAMEG00000018653 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GJB2 | ||
| Ensembl ID: | ENSAMEG00000014072 | ||
| Aliases: | None | ||
| Description: | gap junction protein, beta 2, 26kDa [Source:HGNC Symbol;Acc:4284] |
Retrocopy-Parental alignment summary:
>retro_amel_61
ATGGACTGGGGTACCCTACACACTTTCATCGGGGGTGTAAACAAGCACTCCACCAGCATCGGGAAGGTATGGATCACCGT
CATCTTCATTTTCCGTGTCATGATTCTTGTAGTGGCTGCTCAGGAAGTGTGGGGTGATGAACAGGAAGATTTTGTCTGCA
ACACTCTGCAACCAGGGTGCAAAAATGTGTGCTATGACCACTTTTTTCCTGTGTCCCACATCCGGCTGTGGGCCCTGCAA
CTCATCTTTGTCTCCACCCCAGCCCTGCTGGTAGCGATGCATGTCGCCTACTACAGACACGAGGCTGCCCGCAAATTTAG
GCGAGGAGAGAAAAGAAATGAATTCAAAGACTTAGAAGACATTAAAAAGCAGAAGGTTCGAATAGAGGGGTCCCTGTGGT
GGACATACACCAGCAGTATCTTTTTCCGAATCATCTTTGAAGCCTCCTTTATGTACGTGTTTTACTTCCTTTACAATGGG
TACCACCTGCCCTGGGTGTTGAAATGTGGGATTGACCCTTGCCCCAACTTGGTCGACTGCTTTATCTCTAGACCTACTGA
GAAAACCGTGTTTACCATTTTTATGATTTCTGCGTCTGTGATTTGCATGCTGCTTAATGTGGCCGAGTTGTGTTACCTGC
TGCTGAAAGTATGTTTTAGGCGATCAAAAAGAATGCAAACACAAAGAAATCATCCCAATCACGCCCTAAAAGAGAGTAAG
CAAAATGAAATGAATGAGCTGATTTCAGATAGTGGTCAAAATGCCATCACAGGCTTTCCAAGTTAA
ORF - retro_amel_61 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.5 % |
| Parental protein coverage: | 83.92 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MDWSTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGCKNVCYDHYFP |
| MDW.TL.T..GGVNKHSTSIGK.W.TV.FIFR.MILVVAA.EVWGDEQ.DFVCNTLQPGCKNVCYDH.FP | |
| Retrocopy | MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGCKNVCYDHFFP |
| Parental | ISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEEIKSQKVRIEGSLWWTYTSSI |
| .SHIRLWALQLIFVSTPALLVAMHVAY.RHE..RKF..GE...EFKD.E.IK.QKVRIEGSLWWTYTSSI | |
| Retrocopy | VSHIRLWALQLIFVSTPALLVAMHVAYYRHEAARKFRRGEKRNEFKDLEDIKKQKVRIEGSLWWTYTSSI |
| Parental | FFRVIFEAVFMYVFYIMYDGFSMQRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLNVTEL |
| FFR.IFEA.FMYVFY..Y.G.......KC...PCPN.VDCF.SRPTEKTVFT.FMI..S.IC.LLNV.EL | |
| Retrocopy | FFRIIFEASFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDCFISRPTEKTVFTIFMISASVICMLLNVAEL |
| Parental | CYLLIRYCSACFGREKERLFLPNHMLTSNR |
| CYLL...C.....R.......PNH.L.... | |
| Retrocopy | CYLLLKVCFRRSKRMQTQRNHPNHALKESK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_61 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_61 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000014072 | 1 retrocopy |
retro_amel_61 ,
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