RetrogeneDB ID: retro_amel_626

Retrocopy location

• Organism: Panda (Ailuropoda melanoleuca)
• Coordinates: GL192534.1:956886..957127(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSAMEG00000015254
• Aliases: None
• Description: None

Sequence

>retro_amel_626
ATGTCAGGCCCCAGTGGGGACTTGGGCATGCCAGTGGAGGCAGGCAATGACAGTGAGGACGTCGGCTTCAGAGAAGCAGA
ATCTGTGCCCTCAACTCCATATTGGACCAGATCAGCTCCTGTCTAGACCAGCTGGAGGAGGACAACCACGTCCACACCCA
CCTCTAGTTGCTGCTTGAGTACACCAGTAAACACACCTTGTGTTCTAGCAGCAGTTCGGGGAGGCCCCTAGTGATGCCAA
T

Alignment

ORF - retro_amel_626 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.9 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSGPNGDLGMPVEADAEGEKDGFGEAE-YAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQ-TRL
          MSGP.GDLGMPVEA....E..GF.EAE...A.NS.LDQI.SCLD.LEE.N.H.H..L..LLE.....T.L
Retrocopy MSGPSGDLGMPVEAGNDSEDVGFREAE<ICALNSILDQISSCLDQLEEDN-HVHTHL*LLLEYTSK<THL

Parental  EFQQQLGEAPSDAS
          .F.QQ.GEAPSDA.
Retrocopy VF*QQFGEAPSDAN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_amel_626 retrocopy.

TSS

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab

retro_amel_626 was not experimentally validated.

Homology

Retrocopy orthology:

Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015254	6 retrocopies	retro_amel_100, retro_amel_1321, retro_amel_1561, retro_amel_1901, retro_amel_626 , retro_amel_856,