RetrogeneDB ID: | retro_amel_742 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192602.1:1553352..1553802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSPAN5 | ||
Ensembl ID: | ENSAMEG00000013851 | ||
Aliases: | None | ||
Description: | tetraspanin 5 [Source:HGNC Symbol;Acc:17753] |
Percent Identity: | 80.13 % |
Parental protein coverage: | 56.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | WIKDQLYFFINNNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCC |
W.KD.LYFFI.N.IRAYRDD.DLQNLIDF.QEY.Q...A.GADDWNLNIYFNCTD.N.S.E.CG.PFS.. | |
Retrocopy | WLKDHLYFFISN-IRAYRDDTDLQNLIDFIQEYQQFHEASGADDWNLNIYFNCTDPNTSQE*CGMPFSYR |
Parental | TKDPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGICLAQNL |
..DPAE.VI.TQCGYD.RQKPEVDQQ.VI.TKGCVPQFEK.LQDNLT.V.GIFIGIALLQI.GICLAQNL | |
Retrocopy | IEDPAENVIDTQCGYDVRQKPEVDQQMVICTKGCVPQFEKQLQDNLTLVVGIFIGIALLQIWGICLAQNL |
Parental | VSDIEAVRASW |
V.DIEAVRASW | |
Retrocopy | VHDIEAVRASW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007218 | 2 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000013851 | 1 retrocopy |
retro_amel_742 ,
|
Canis familiaris | ENSCAFG00000010287 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013549 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012685 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007405 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003024 | 1 retrocopy |