RetrogeneDB ID: | retro_amel_831 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192667.1:76879..78439(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DLGAP5 | ||
| Ensembl ID: | ENSAMEG00000007001 | ||
| Aliases: | None | ||
| Description: | discs, large (Drosophila) homolog-associated protein 5 [Source:HGNC Symbol;Acc:16864] |
Retrocopy-Parental alignment summary:
>retro_amel_831
CAGATGGAGTCTTACCAAAAATGGAGAACTGCAAAAATGAAAGGGAAGAATTCCTTTGCACCTCAGGATTTTATGTTTCA
GCCACTGGATGGTCTGAAGACCTATCAAGTAACACCTATGACTCCCAGAAGTGCCAATTCTTTCTTGACACCCAGTTATA
CCTGGATCCTTTTAAAAACAGAAGTTGGTAAGTCTCAAGAAGTGACAAAAGAAATTTTGGCTCAAAAATGTATAACTTAC
CCTGCAAAGACAGTACATCAGGATTCAGATAAACTGCAACATCCTTTGGGTTCTCTAACAGTTTGGAATAAAGCACATGT
CTTAAATAAAGATGAGACTACTAAAAATTCAAATGGCTTTATAATAAAAGTCCCATCACTTGAAATAAATGAAGATCGGG
TATCTCAGCCCAACCATGACGTGCCATATTTCAGAAATATTCTTCAGTTAGGAATTGAGAAATTAACCTCGCACTGTCTT
GAGTGGGACAGGAAGCTTGAACTGGACATTCCAGATGATGCTAAAGGTCTTGTTCGCGCTGCAGTTGGGCAAACGAGACT
CTGCATGCAAGGACGTTTCAAGCAGTTTGAAGGGCTGGTGGACAATTGTGAATATAAGCGAGGCGAAAAGGAGACTACCT
GTGCAGATCCGGATGGGTCTGGGGATATGGTCAGTTTTCAGATAGAAGATGTAAACCAAAAATTCAACCATTTGACCGAA
CTTGAGGAATCTGGACGGCAGAACAACAGTAATATAAACTAAAAAGTCTTTCAGGAGAAAGTTGTCTCGGGGGTAGCAAG
TAAACCCAAAGAGGATGATGGTGAAAGAATTGCAGCTAGGAATTGCCTGGCTGCCATAAAAAGTGCCATGAGAGAGAGGA
TGAAGCAGGGAGAAACCGCGCAGGCAGCGGCCTCTGTAATGCCAAAGGAAGTTGATAAAGTAGTGTTTGAAGCTGGATTC
TTCAGAATCGACAGTCCTGTTCAATCCTTCTCAGGACTTTCTATCTCTTCTGAATGTCTTTCTCAAAGACTGAGGACACC
TAAGTCTGTCAGCAAAGCTGGGTCTGAGAGCAGGCCTGAGACGGACCATCTACGGCAAACAGTGTCACCGCAGAATCCTG
ATCCGCAGGGCACCAAAAGTGAGCAGGTTGATAAAGAGACTTTGCTTTCAACTAGTCCTAAAAACAGGAACAGCATAGAA
GACGCTCAGTGTCCTGGATTGCAAGATTTAATTGATGTACATCATGATGCAAACAGATGAACTTTGAGATGGATTGTTTA
CCCAGTGAAAGAATGAATTTGCCTCTACTTGCTAGTGAAGTGGCACATGATAATAATACTAATAAAAAGGAAGGAATTCC
AGATGTTGTAGAAGGCATGGAACTACATTCTTCATTTACAGCCCAGGATGCTTTGATGAGCAGCCCTGAAAAAAAAAATA
CCATCACAAAATGACATCTTATGTCAAAATGAAGAGAAAACTGAAATTTCTCAGTCAGTATTTGATATTCAAAGTCTCAC
TACTGAGTGCCATGTTCTTGATTCGCCAGGCCTAAACTGC
ORF - retro_amel_831 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.22 % |
| Parental protein coverage: | 61.38 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | KMENLPKTNTAKMKGKNSFAPQDFMFQPLDGLKTYQVTPMTPRSANAFLTPSYTWTPLKTEADKTQEVTK |
| .ME...K..TAKMKGKNSFAPQDFMFQPLDGLKTYQVTPMTPRSAN.FLTPSYTW..LKTE..K.QEVTK | |
| Retrocopy | QMESYQKWRTAKMKGKNSFAPQDFMFQPLDGLKTYQVTPMTPRSANSFLTPSYTWILLKTEVGKSQEVTK |
| Parental | EILAQKCKTYSAKTVHRYSDKLQCPLGSLTVWNKEHVLNKDETTKNSNGLTIKEVPSLEINEYRISQPHH |
| EILAQKC.TY.AKTVH..SDKLQ.PLGSLTVWNK.HVLNKDETTKNSNG..IK.VPSLEINE.R.SQP.H | |
| Retrocopy | EILAQKCITYPAKTVHQDSDKLQHPLGSLTVWNKAHVLNKDETTKNSNGFIIK-VPSLEINEDRVSQPNH |
| Parental | DVPYFRNILQSETEKLTSHCLEWDRKLELDIPDDAKDLIRTAVGQTRLLMKERFKQFEGLVDNCEYKRGE |
| DVPYFRNILQ...EKLTSHCLEWDRKLELDIPDDAK.L.R.AVGQTRL.M..RFKQFEGLVDNCEYKRGE | |
| Retrocopy | DVPYFRNILQLGIEKLTSHCLEWDRKLELDIPDDAKGLVRAAVGQTRLCMQGRFKQFEGLVDNCEYKRGE |
| Parental | KETTCTDLDGFWDMVSFQIEDVNQKFNNLTKLEESGWQNNNNINKKVFRKKVVSGVASKPKQDDGGRIAA |
| KETTC.D.DG..DMVSFQIEDVNQKFN.LT.LEESG.QNN.NIN.KVF..KVVSGVASKPK.DDG.RIAA | |
| Retrocopy | KETTCADPDGSGDMVSFQIEDVNQKFNHLTELEESGRQNNSNIN*KVFQEKVVSGVASKPKEDDGERIAA |
| Parental | RNRLAAIKNAMRERMKQEETAEAAASVMPKEVDKIVFDAGFFRIESPVKSFSGLSISSECLSQRLRTPKS |
| RN.LAAIK.AMRERMKQ.ETA.AAASVMPKEVDK.VF.AGFFRI.SPV.SFSGLSISSECLSQRLRTPKS | |
| Retrocopy | RNCLAAIKSAMRERMKQGETAQAAASVMPKEVDKVVFEAGFFRIDSPVQSFSGLSISSECLSQRLRTPKS |
| Parental | VSKAVSESRAEMDHLQQTVSPQNPHPQSTKSEHVDKENLLSTIPKNRNSIEDAQCPGLQDLIDVNYDANK |
| VSKA.SESR.E.DHL.QTVSPQNP.PQ.TKSE.VDKE.LLST.PKNRNSIEDAQCPGLQDLIDV..DAN. | |
| Retrocopy | VSKAGSESRPETDHLRQTVSPQNPDPQGTKSEQVDKETLLSTSPKNRNSIEDAQCPGLQDLIDVHHDANR |
| Parental | -MNFEMDCLPSERMNLPLLASEVADDNNTNKKEEIPD-VEGMELHSSFTAQDVLMSSP-EKKIPSQNDIL |
| .MNFEMDCLPSERMNLPLLASEVA.DNNTNKKE.IPD.VEGMELHSSFTAQD.LMSSP.....PSQNDIL | |
| Retrocopy | <MNFEMDCLPSERMNLPLLASEVAHDNNTNKKEGIPDVVEGMELHSSFTAQDALMSSP>XXXXPSQNDIL |
| Parental | CQNEEKTKISQSVFSVFDIKSLTTEFHLLDSPGLNC |
| CQNEEKT.ISQSVF...DI.SLTTE.H.LDSPGLNC | |
| Retrocopy | CQNEEKTEISQSVF---DIQSLTTECHVLDSPGLNC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_831 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_831 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007001 | 1 retrocopy |
retro_amel_831 ,
|
| Equus caballus | ENSECAG00000008655 | 1 retrocopy |