RetrogeneDB ID: retro_bole_23

Retrocopy location

• Organism: Brassica oleracea
• Coordinates: C4:5398727..5405753(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Bo4g026890
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Bo1g022050
• Aliases: None
• Description: None

Sequence

>retro_bole_23
ATGTGGAACAACAACGATGCTATGCCCTTAGCCCCTCCTGGTACCGGTATGCCGCCACCTTGTAATCCGACTCCTACTCT
CGAAGAGAAGTCTAGTAGATGGACGCAGCTAAATTCGAAACGCTACGGAGACAGCAAGAGGAGGTTCGGATTCGTGGAGA
CTCAAAAGGAGGACATGCCCCCTGAGCACGTCAGGAAGATCATCAAGGACCACGGCGACATGTCATCGAAGAAATTCACC
CACGACAAACGCGTATACCTAGGAGCACTCAAGTTCGTCCCTCACGCCGTCTTCAAGCTCCTGGAGAACATGCCGATGCC
TTGGGAGCAGGTCCGTGACGTGAAGGTTCTGTACCACGTCACCGGAGCCATCACGTTCGTGAACGAGATCCCGTTGGTCG
TGGAGCCTATCTACATGGCTCAGTGGGGCACTATGTGGATCATGATGCGGAGGGAGAAGAGGGACCGTCGCCACTTTAAA
AGAATGAGGTTTCCTCCGTTTGATGACGAGGAGCCTCCTCTTGACTACGCGGATAACTTGCTTGACGTGGAGCCTCTCGA
GGCGATTCAGATGGAGCTTGACGAGGAGGAGGATTCAGCTGTGTACACTTGGTTTTACGACCATAAGCCGTTGGTGAAGA
CCAAACTCATTAACGGTCCTAGCTACAAGAGGTGGAATCTCTCGCTTCCGATCATGGCGACCCTTCACAGGCTTGCGGGA
CAGCTGCTGTCTGATAATTTAATCGATCGGAACTACTTCTACTTGTTTGACAAGGAATCTTTCTTCACAGCGAAGGCTTT
GAACATGTGCATACCCGGCGGTCCTAAGTTTGAGCCTTTGTACCGAGACATGGAGAGAGGGGATGAGGATTGGAACGAGT
TTAATGACATCACCAAGCTTATCATTCGCTCTCCTTTGAGAACTGAATACAGAATAGCTTTTCCTCATTTGTATAATAAT
AGGCCGAGGAAGGTGAAACTAGGCGTGTATCACAGCCCTATGGTTATGTACGTAAAGACCGAGGATCCTGATCTTCCTGC
TTTTTATTACGATCCGTTGATTCACCCAATAAGCAGCAATACTAATAAAGAAAGGCGGAAAAGGAAGTTTTATGATGATG
ATGGTGATGATGAGGATGAAGATGAAGATGATGATTTTACCTTACCTGAAGGAGTAGAGCCTTTGCTAAAAGACACAAAG
CTCTATACCGACACTACATCTGCTGGAATCTCTTTGTTGTTTGCGCCACGGCCTTTCAATATGAGGTCTGGGAGGACGCG
GCGGTCCGAAGATATCCCACTGGTGTCAGAGTGGTTCAAGGAGCACTGTCCTCAGTCTTATCCTGTTAAAGTTCGTGTCA
GTTACCAAAAGCTTTTGAAATGCTACGTGCTGAACGGTCTGCACAGTAGACCACCTAAGTCTCATAAGAAGAAGCATTTA
TTCCGCTCCCTCGCGGCGACAAAGTTTTTCCAAAGCACCGAACTGGACTGGGTTGAAGCGGGTCTGCAAGTCTGCCGGCA
AGGGCATAACATGCTGAATCTGCTGATTCACCGCAAGGGTTTGAACTATTTGCATCTCGACTACAACTTCAACCTGAAGC
CTGTGAAGACTTTAACCACCAAAGAGAGGAAGAAGTCGCGTTTCGGGAACGCTTTCCATCTCTGCCGAGAGATCCTCCGC
CTGACGAAACTTGTGGTCGATGCAAACGTCCAGTTCCGCCTCGGTAACGTAGACGCCTTCCAGCTGGCTGACGGGCTTCA
GTATATATTCTCCCACGTCGGCCAGCTGACGGGTATGTACCGGTACAAGTACAGACTCATGAGGCAGATCAGGATGTGCA
AGGACTTAAAGCACTTGATATACTACCGTTTCAACACCGGTCCAGTCGGTAAAGGACCAGGGTGTGGGTTCTGGGCTCCC
ATGTGGAGGGTTTGGTTGTTTTTCCTACGAGGAATAGTTCCTCTTCTCGAACGATGGCTAGGGAACCTTCTCGGCCGTCA
GTTCGAGGGGCGTCACTCGAAAGGAGTTGCGAAAACGGTCACGAAGCAGAGAGTCGAAAGCCATTTCGATCTGGAGCTTC
GAGCTGCCGTCATGCATGACGTTCTCGATGCAATGCCTGAAGGTATCAGGAAAAACAAAGCGAAGACGATATTACAGCAT
CTTAGCGAGGCGTGGCGGTGCTGGAAAGCTAATATCGCTTGGAAGGTCCCCGGGTTGCCCGTACCGGTCGAGAATATGAT
TCTTCGTTATGTTAAGTCTAAGGCTGATTGGTGGACTAACGTTGCTCACTACAACCGTGAGCGTATCAGAAGAGGAGCTA
CAGTTGATAAGACTGTTTGTAAGAAGAATCTAGGAAGGTTGACTCGTCTTTGGCTAAAGGCGGAGCAGGAGCGGCAGCAC
AATTACTTGAAAGATGGTCCGTACGTTACTTCGGAGGAAGCAGTGTCGATTCACAGAACGACTTTTCATTGGCTGGAATC
GAGGATGTTCTCTCCGATTCCGTTCCCTCCACTGTCGTACAAGCACGACACGAAGATTCTCATCCTGGCCCTCGAGAGGC
TGAAGGAATCATACGGTGGTGCCGTGAGGTTGAACCAGCAGCAGCGAGAGGAGCTTGGTCTGATTGAGCAAGCTTACGAC
AATCCTCATGAAGCATTGTCACGTATCAAACGTCTTCTCCTCACGCAGCGTAACATGAAAGAGGTTGGCATACAGTTTAT
GGATCTGTACAGCTACTTGATTCCAGTGTACGAGATAGATCCTCTAGAGAAGATTACAGATGCTTATCTTGATCAGTACT
TGTGGTACGAAGGTGATAAGCGCGGTTTGTTCCCGAACTGGATCAAGCCGGCAGACTCTGAGCCGCCACCGCTTCTGGTT
TACAAGTGGTGTCAAGGTGTAAATAACTTGCAAGGCGTATGGGACACGAGTGATGGGCAGTGTGTGGTGATGCTCCAGAC
GAAGTTCGAAAAGCTCTTTGAGAAGATCGATTTGACTATGTTGAACAGGCTTCTCCGTTTGATTCTTGATCACAATCTCG
CAGATTACATGTGCGCCAAGAACAACGTGCTTCTGGCTTACAAGGATATGAGTCATACCAACTCGCACGGTCTGATCAGG
GGACTTCAGTTTGCGTCGTTTGTTGTTCAGTTTTACGGACTGTCTCTTGATCTCGTGCTTCTCGGTTTGACTCGAGCAAC
TGAAATCGCTGGACCGCCGCAGACGCCTAACGAGTTTATGACGTTTTGGGATACGAAAGTGGAGACGTGTCATCCCATAA
GGATCTATGCTCGGTACATAGACAGAGTTCATATAATGTTTAAATTCACCCACCAAGAGGCACGTGATCTTATCCAGAGG
TATCTCACGGAGCATCCCGATCCCAACAATGAGAACATGGTGGGATACAACAACAAAAAGTGCTGGCCGAGAGATGCGAG
GATGAGGCTGATGAAACACGATGTTAATCTCGGTAGAAGCGTGTTCTGGGGCATAAAGAACCGTCTGCCTCGGAGCATCA
CGACTTTGGAGTGGGAGAATGGGTTTGTCTCTGTCTACAGCAAGGATAATCCCAACCTTCTCTTCAGCATGTGTGGATTT
GAAGTTCGGATACTTCCCAAAATCAGGATGACGCAAAGCAATACTAAAGATGGTGTGTGGAATCTTCAGAATGAACAGAC
CAAGGAGAGGACTGCGGCTGCTTTTCTCCGGGTCGACGACGAGCACATGAAGGCGTTTGAGAATCGCGTGAGGCAGATTC
TCATGTCGTCAGGATCAACAACTTTCACCAAGATAGTCAACAAGTGGAACACGGCTCTGATCGGTCTCATGACTTACTTT
CGCGAAGCCACTGTCCACACGCAAGAGCTCTTGGACCTTCTGGTCAAGTGCGAGAACAAAATCCAGACGAGGATCAAGAT
AGGGCTGAACTCAAAGATGCCTAGCCGGTTTCCTCCCGTTGTCTTCTACGCTCCAAAGGAGCTTGGCGGTCTTGGAATGT
TGTCAATGGGTCATATCTTGATCCCACAAAGCGACCTCAAGCACAGCAAGCAAACAGACGTTGGTGTAACCCACTTTAGA
AGTGGGATGAGCCACGAGGAAGATCAGCTTATACCAAATCTGTACCGTTACATCCAGCCATGGGAGAGCGAGTTCATCGA
TTCGCAGCGTGTGTGGGCAGAGTATGCTCTAAAGAGGCAGGAAGCGCAGGTCCAGAACAGGCGTCTTACATTAGAAGATC
TTGAAGACTCTTGGGATAGAGGAATCCCTCGTATAAACACACTGTTCCAGAAGGATAGGCACACGCTAGCGTACGATAAA
GGCTGGAGGGTCCGGACCGAGTTTAAGCAGTACCAAGTCCTTAAACAAAACCCATTCTGGTGGACGCACCAGAGGCACGA
CGGGAAGCTCTGGAACTTGAACAACTACCGAACCGACGTTATCCAAGCTCTCGGAGGCGTCGAGGGTATCCTCGAGCATA
CACTCTTCAAGGGAACATATTTCCCAACGTGGGAGGGTCTTTTCTGGGAGAAGGCGTCTGGTTTCGAGGAGTCGATGAAG
TACAAGAAGCTGACGAACGCGCAGAGGTCTGGTCTGAACCAGATTCCGAACAGGAGATTCACTCTCTGGTGGTCGCCGAC
GATTAACCGGGCGAATGTTTACTTGGGTTTCCAGGTGCAGTTGGACCTGACGGGAGTGTTCATGCATGGAAAGATTCCTA
CGCTGAAGATATCTTTGATTCAGATATTCCGCGCCCATTTGTGGCAAAAGATCCACGAGAGTGTAGTCATGGATCTTTGC
CAAGTGCTGGACCATGAGCTGGAGGCTTTGGAGATAGAAACTGTGCAGAAGGAGACGATTCACCCGAGGAAGAGTTACAA
GATGAACAGCTCTTGCGCTGACGTTCTTCTATTCGCTTCCGGTAAATGGCCAATGTCGAAACCAAGCCTGCTCGCCGAGT
CGAAAGACGTGTTCGACCAGAAGGCGAGCAACAAGTACTGGATCGATGTGCAGCTTCGATGGGGAGATTACGACTCCCAC
GATATCGAGCGTTACACCAGGGCCAAGTTTATGGACTACACAGCGGATAGCATGTCTATATATCCGTCTCCGACCGGGGT
GGTGATTGGGATTGATCTGGCGTACAACTTGCATTCCGCGTTTGGTAATTGGTTCCCTGGTTCGAAGCCTCTTGTTACTC
AAGCGATGAACAAGATTATGAAGGCGAATCCGGCTCTACACGCGTTGAGGGATAGGATAAAGAAAGGCTTGCAGTTGTAC
TCGTCCGCTCCCACGGAGCCGTACTTGTCGTCTCAAAACTATGGGGAGATATTCAATAATCAGATTAAATGGTTTGTTGA
TGATACTAATGTCTACCGCGTCACGATTCACAAGACTTTCGAGGGGAATCTAACGACAAAGCCGATCAACGGTGCGGTTT
TTGTTTTCAATCCGAGAACTGGACAGCTGTTTTTGAAGGTTATCCATACAAGTGTTTGGGCTGGTCAGAAGCGTCTCGGA
CAGTTAGCGAAGTGGAAAACTGCTGAAGAGGTTGCTGCGCTTGTGAGGTCTCTCCCCGTTGAAGAACAGCCGAAGCAGAT
CATTGTTACACGTAAAGGAATGCTGGATCCGTTAGAGGTTCACTTGCTGGACTTCCCTAACGTTGTTATCAAGGGAAGCG
AGCTTCAGCTTCCGTTCCAGGCTTGTCTCAAGATTGAGACGTTCGGGGATATGATTCTGAAGGCGACGGAGCCGAAGATG
GTTTTGTTCAATATCTATGATGATGGGTTGAAGAGTGTTTCTTCTTATACCTGCTTTTCGAGACTTATTCTGATCCTACG
TGCACTTCATGTGAATAACGACAAGGCTAAGATGCTGTTAAGGCCGGACAAGTCTGTTGTCACTGAGCCGCATCACATCT
GGCCTTCGCTCACTGATGACCAGTGGATGAAGGTGGAGGTAGCACTAAGAGATTTAATCCTTTCTGACTACGCGAAGAAG
AACAATGTGAGCACATCGGCTCTAACGCAATCGGAGATGAGAGATATTATTCTAGGAGCTGACATCACTCCACCCTCTCA
GCAGAGGCAACAGATAGCTGAGATTGAGAAACAAGCCAGCCAGGCTATTGCAGTCACAACGAAAACGAGAAACGTTCACG
GAGACGAGCTCATCGTCTCCACCGTGACCCCCTACGAGCAAGCTGCGTTTAGTTCCAAAACAGATTGGCGCGTGCGTGCA
ATATCAGCAACCAACCTCTACCTAAGAGTCAACCACATCTACGTGAACTCGGACAACATAAACGAGTCCGGATACACATA
CATCATGCCGAAGAACCTCCTGAAGAGGTTCATATGTATAGCGGATCTCCGCACCCAAATCGCTGGATACTTGTACGGTA
TCAGCCCCCCGGATAATCCTCGAGTGAAGGAGATTCGTTGCGTTGTGATGGTGCCGCAGCGGGGAAGCTCCCAGGCTGTT
CACCTGCCTTCGTCTCTCCCTGAGAATGATTTGTTAAACGGTCTCGAGCCCTTGGGGTGGTTGCACACGCAGCCTAACGA
GCTCCCGGAGCTCTCGCCACAGGATGTTGTCTCTCATTCTCGGATTCTGGAGAAGAACAAGAAGCAGTGGGATGTTGACA
AATGCATCGTCATGACGTGTAGTTTTACTCCGGGTTCGTGCTCTTTGACGGCTTATAAGCTGACTCAAAGTGGATATGAA
TGGGGACGAGACAACCAGGACGCAGGCGGGAGAAGCGATCCTCGGGGTTATGTTCCCACGCATTATGAGAAGGTTCAGAT
GCTGTTGAGTGACCGTTTCCTCGGGTTTTATATGGTTCCTGAAAACGGATCGTGGAACTATAATTTTATGGGAACGAAGC
ATGCGGTGGATATGAAGTACAGCGTCAGACTTGGATACCCGAAGGAGTACTTTGACGTGGAGCATCGACCTACTCATTTC
TTGGAGTTTAGTAGCATGGAGGATGTTGAAATGGCCGAGGGAGATCGAGAGGACATCTTTGGTTGA

Alignment

ORF - retro_bole_23 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.26 %
• Parental protein coverage: 83.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EDDGEDDFILPEGVEPLLKDTHLYTDTTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYP
          ..D..DDF.LPEGVEPLLKDT.LYTDTT.AGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCP..YP
Retrocopy DEDEDDDFTLPEGVEPLLKDTKLYTDTTSAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPQSYP

Parental  VKVRVSYQKLLKCYVLNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHR
          VKVRVSYQKLLKCYVLN.LH.RPPK..KKKHLFRSLAATKFFQSTELDWVE.GLQVCRQG.NMLNLLIHR
Retrocopy VKVRVSYQKLLKCYVLNGLHSRPPKSHKKKHLFRSLAATKFFQSTELDWVEAGLQVCRQGHNMLNLLIHR

Parental  KNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQY
          K.LNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQY
Retrocopy KGLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQY

Parental  IFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLER
          IFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLER
Retrocopy IFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLER

Parental  WLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCW
          WLGNLL.RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGI..NKA.TILQHLSEAWRCW
Retrocopy WLGNLLGRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIRKNKAKTILQHLSEAWRCW

Parental  KANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQER
          KANI.WKVPGLPVP.ENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVC.KNLGRLTRLWLKAEQER
Retrocopy KANIAWKVPGLPVPVENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQER

Parental  QHNYLKDGPYVTPEEALAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQ
          QHNYLKDGPYVT.EEA..I..TT.HWLESR.FSPIPFPPLSYKHDTK.LILALERLKESY..AVRLNQQQ
Retrocopy QHNYLKDGPYVTSEEAVSIHRTTFHWLESRMFSPIPFPPLSYKHDTKILILALERLKESYGGAVRLNQQQ

Parental  REELGLIEQAYDNPHEALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEG
          REELGLIEQAYDNPHEALSRIKR.LLTQR..KEVGI.FMDLYSYLIPVYEI.PLEKITDAYLDQYLWYEG
Retrocopy REELGLIEQAYDNPHEALSRIKRLLLTQRNMKEVGIQFMDLYSYLIPVYEIDPLEKITDAYLDQYLWYEG

Parental  DKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV
          DKR.LFPNWIKPADSEPPPLLVYKWCQG.NNLQG.WDT.DGQCVVMLQTKFEK.FEKIDLTMLNRLLRL.
Retrocopy DKRGLFPNWIKPADSEPPPLLVYKWCQGVNNLQGVWDTSDGQCVVMLQTKFEKLFEKIDLTMLNRLLRLI

Parental  LDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGLTRASEIAGPPQMPNE
          LDHN.ADY..AKNNV.L.YKDMSHTNS.GLIRGLQFASFVVQFYGL.LDL.LLGLTRA.EIAGPPQ.PNE
Retrocopy LDHNLADYMCAKNNVLLAYKDMSHTNSHGLIRGLQFASFVVQFYGLSLDLVLLGLTRATEIAGPPQTPNE

Parental  FMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARM
          FMTFWDTKVET.HPIR.Y.RYID.VHIMFKFTH.EARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARM
Retrocopy FMTFWDTKVETCHPIRIYARYIDRVHIMFKFTHQEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARM

Parental  RLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNT
          RLMKHDVNLGRSVFW..KNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQ...SNT
Retrocopy RLMKHDVNLGRSVFWGIKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQ---SNT

Parental  RDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRARQILMSSGSTTFTKIVNKWNTALIGLMTYFREATV
          .DGVWNLQNEQTKERTA.AFLRVDDEHMK.FENR.RQILMSSGSTTFTKIVNKWNTALIGLMTYFREATV
Retrocopy KDGVWNLQNEQTKERTAAAFLRVDDEHMKAFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATV

Parental  HTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVG
          HTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPV.FY.PKE.GGLGMLSMGHILIPQSDL..SKQTDVG
Retrocopy HTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYAPKELGGLGMLSMGHILIPQSDLKHSKQTDVG

Parental  VTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRI
          VTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQ.QNRRLTLEDLEDSWDRGIPRI
Retrocopy VTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQVQNRRLTLEDLEDSWDRGIPRI

Parental  NTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL
          NTLFQKDRHTLAYDKGWRVRT.FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL
Retrocopy NTLFQKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTL

Parental  FKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTG
          FKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY.GFQVQLDLTG
Retrocopy FKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYLGFQVQLDLTG

Parental  IFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADV
          .FMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLD.EL.ALEIETVQKETIHPRKSYKMNSSCADV
Retrocopy VFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDHELEALEIETVQKETIHPRKSYKMNSSCADV

Parental  LLFAAHKWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPT
          LLFA..KWPMSKPSL.AESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYT.D.MSIYPSPT
Retrocopy LLFASGKWPMSKPSLLAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTADSMSIYPSPT

Parental  GVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYG
          GV.IG.DLAYNLHSAFGNWFPGSKPL..QAMNKIMK.NPAL..LR.RI.KGLQLYSS.PTEPYLSSQNYG
Retrocopy GVVIGIDLAYNLHSAFGNWFPGSKPLVTQAMNKIMKANPALHALRDRIKKGLQLYSSAPTEPYLSSQNYG

Parental  EIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW
          EIF.NQI.WFVDDTNVYRVTIHKTFEGNLTTKPINGA.F.FNPRTGQLFLKVIHTSVWAGQKRLGQLAKW
Retrocopy EIFNNQIKWFVDDTNVYRVTIHKTFEGNLTTKPINGAVFVFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW

Parental  KTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKA
          KTAEEVAALVRSLPVEEQPKQ.IVTRKGMLDPLEVHLLDFPN.VIKGSELQLPFQACLKIE.FGD.ILKA
Retrocopy KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNVVIKGSELQLPFQACLKIETFGDMILKA

Parental  TEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKV
          TEP.MVLFNIYDD.LKS.SSYT.FSRLILILRALHVNN.KAKMLL.PDKSVVTEPHHIWPSLTDDQWMKV
Retrocopy TEPKMVLFNIYDDGLKSVSSYTCFSRLILILRALHVNNDKAKMLLRPDKSVVTEPHHIWPSLTDDQWMKV

Parental  EVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQINAVTTRTTNV
          EVALRDLILSDYAKKNNV.TSALTQSE.RDIILGA.ITPPSQQRQQIAEIEKQA...SQ..AVTT.T.NV
Retrocopy EVALRDLILSDYAKKNNVSTSALTQSEMRDIILGADITPPSQQRQQIAEIEKQA---SQAIAVTTKTRNV

Parental  HGEELIVTTVSPYEQTAFGSKTDWRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNVLKKFICIAD
          HG.ELIV.TV.PYEQ.AF.SKTDWRVRAISATNLYLRVNHIYVNSD.I.E.GYTYIMPKN.LK.FICIAD
Retrocopy HGDELIVSTVTPYEQAAFSSKTDWRVRAISATNLYLRVNHIYVNSDNINESGYTYIMPKNLLKRFICIAD

Parental  LRTQIAGYLYGISPPDNPQVKEIRCVVMVPQWGSHQHLNLPSALPEHEFLNDLEPLGWLHTQPNELPQLS
          LRTQIAGYLYGISPPDNP.VKEIRCVVMVPQ.GS.Q...LPS.LPE...LN.LEPLGWLHTQPNELP.LS
Retrocopy LRTQIAGYLYGISPPDNPRVKEIRCVVMVPQRGSSQAVHLPSSLPENDLLNGLEPLGWLHTQPNELPELS

Parental  PQDVTSHSRILE-NNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGG--NPHGYLPTHY
          PQDV.SHSRILE.N.KQWD..KCI..TCSFTPGSCSLT.YKLTQ.GYEWGR.N.D.GG...P.GY.PTHY
Retrocopy PQDVVSHSRILEKNKKQWDVDKCIVMTCSFTPGSCSLTAYKLTQSGYEWGRDNQDAGGRSDPRGYVPTHY

Parental  EKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVGMKYSVKLGSPKEYYHEEHRPTHFLEFSNMEEADIA
          EKVQMLLSDRFLGFYMVPENG.WNYNFMG.KH.V.MKYSV.LG.PKEY...EHRPTHFLEFS.ME....A
Retrocopy EKVQMLLSDRFLGFYMVPENGSWNYNFMGTKHAVDMKYSVRLGYPKEYFDVEHRPTHFLEFSSMEDVEMA

Parental  EGDREDTF
          EGDRED.F
Retrocopy EGDREDIF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Brassica oleracea was not studied using RNA-Seq expression data.

ChIP-Seq

Brassica oleracea was not studied using ChIP-Seq data.

EST

Brassica oleracea was not studied using EST data.

TSS

Brassica oleracea was not studied using FANTOM5 data.

Lab

retro_bole_23 was not experimentally validated.

Homology

Retrocopy orthology:

Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Brassica oleracea	Bo1g022050	1 retrocopy	retro_bole_23 ,