RetrogeneDB ID: | retro_bole_70 | ||
Retrocopy location | Organism: | Brassica oleracea | |
| Coordinates: | C9:19724239..19724485(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Bo7g019910 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_bole_70
ACTGATGTCTCACAACTGTGGTGTATGTGTCAGCTGAGATCTCCTCTCTATAGTTGTGTGTATTAGACATATCTGATGTC
ACCTTTTGTACTAGCCTCCCTCGGTTTGTAGCATCGTCGACCGATGTCTGTTTACGAATGTCGGTCGATATGTTGTTGCG
TCTTTCAATCGATGCTGATGCTTCTAGTCGACGGGCAATGTAACTATGAATCTCAACTAATTCCCCTTGAACAGCTTCTA
TCTTGG
ORF - retro_bole_70 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.71 % |
| Parental protein coverage: | 65.08 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | TDVRML-ISVVAAEISCPWYCVSDMSDFTFGTNRPRFVASSTNVCLRMSVDMLLRLSIDADSSGRRCPEL |
| TDV..L....V.AEIS....CV.D.SD.TF.T..PRFVASST.VCLRMSVDMLLRLSIDAD.S.RR...L | |
| Retrocopy | TDVSQL<VVYVSAEISSL*LCVLDISDVTFCTSLPRFVASSTDVCLRMSVDMLLRLSIDADASSRRAM*L |
| Parental | -YRSLLPTDLSLLW |
| ....L.P....L.W | |
| Retrocopy | >ESQLIPLEQLLSW |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_70 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Brassica oleracea | Bo7g019910 | 2 retrocopies |
retro_bole_56, retro_bole_70 ,
|