RetrogeneDB ID: | retro_bole_70 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C9:19724239..19724485(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo7g019910 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.71 % |
Parental protein coverage: | 65.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TDVRML-ISVVAAEISCPWYCVSDMSDFTFGTNRPRFVASSTNVCLRMSVDMLLRLSIDADSSGRRCPEL |
TDV..L....V.AEIS....CV.D.SD.TF.T..PRFVASST.VCLRMSVDMLLRLSIDAD.S.RR...L | |
Retrocopy | TDVSQL<VVYVSAEISSL*LCVLDISDVTFCTSLPRFVASSTDVCLRMSVDMLLRLSIDADASSRRAM*L |
Parental | -YRSLLPTDLSLLW |
....L.P....L.W | |
Retrocopy | >ESQLIPLEQLLSW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo7g019910 | 2 retrocopies |
retro_bole_56, retro_bole_70 ,
|