RetrogeneDB ID: | retro_btau_1072 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | 25:15416461..15416779(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RGS16 | ||
| Ensembl ID: | ENSBTAG00000004305 | ||
| Aliases: | None | ||
| Description: | Regulator of G-protein signaling 16 [Source:UniProtKB/Swiss-Prot;Acc:O46471] |
Retrocopy-Parental alignment summary:
>retro_btau_1072
ATGTGTCGGACCCTGGCCGCCTTCCCCACCTCCTGCCTGGAGAGAGCCAAAGAATTCAAGACACGGCTGGGGATCTTTCT
TCATAAGTCAGAACTGGGCTCTGATACCGGGAGTGTTGGCAAGTTCGAGTGGGGCAGTAAACACAGCAAAGAAGGCAAAA
ACTTCTCAGAAGACGTGCTGGGATGGAAAGAGTCATTTGACTTGCTGCTGAGCAGTAAAAATGGAGTGGCCCCCTTCGAC
GCCTTCCTGAAGACAGAGTTCAGCGAGGAGAACCTGGAGTTCTGGCTGGCCTGTGAGGAGTTCAAGAAGCTCCGGTCC
ORF - retro_btau_1072 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98.11 % |
| Parental protein coverage: | 52.48 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MCRTLAAFPTSCLERAKEFKTRLGIFLHKSELGSDTGSVGKFEWGSKHSKEGKNFSEDVLGWKESFDLLL |
| MCRTLAAFPTSCLERAKEFKTRLGIFLHKSELGSDTGSVGKFEWGSKHSKEGKNFSEDVLGWKESFDLLL | |
| Retrocopy | MCRTLAAFPTSCLERAKEFKTRLGIFLHKSELGSDTGSVGKFEWGSKHSKEGKNFSEDVLGWKESFDLLL |
| Parental | SSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKLRS |
| SSKNGVA.F.AFLKTEFSEENLEFWLACEEFKKLRS | |
| Retrocopy | SSKNGVAPFDAFLKTEFSEENLEFWLACEEFKKLRS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 28 .19 RPM |
| ERP005899_muscle | 0 .05 RPM | 4 .70 RPM |
| SRP017611_brain | 0 .05 RPM | 53 .31 RPM |
| SRP017611_kidney | 0 .06 RPM | 4 .33 RPM |
| SRP017611_liver | 0 .00 RPM | 17 .90 RPM |
| SRP030211_testis | 0 .00 RPM | 2 .17 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1072 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1072 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1072 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000004305 | 1 retrocopy |
retro_btau_1072 ,
|
| Bos taurus | ENSBTAG00000034366 | 1 retrocopy |