>retro_btau_1215
ATGGCGAACGTGGCCGACATGAAACTGTAGGACATCCTGGGCGTCCCGCCTGGCACCAGCGAGAACGAGCTGAAGAAGGC
ATACAGAAAGTTAGCCGAAGAATACCATCCTGATAAGAATCCAAATGCTGGTGACAAATTCAAAGAAATAAGTTTTGCAT
ATGAAGTACTATCAAATCCTGAGAAGTGCAAACTATATGACAGATATGGAGAACAAGGTCTTCGGGAAGGTACTGGTGGA
GGTGGTGGCATGGACGATATTTCCTCTTACATCTTTGGTAGAGGATTATTTAGCTTCATGGGTAATCAGAGCAGAAGTCG
AAATGGCAGAAGAGAAGACATGATGCACCCACTCAAAGTATCTTTAGAAGACCTGTATAATGGCAGGACAACCAAACTAC
AACTTAGCAAGAATGTACTCTGTAGAGCATGCAGTGGCCAAGGTGGGAAGTCTGGAGCTGTTCAGAAGTGTAGTGCTTGT
CGGGGTCGAGGTTTACGCATCATGATCAGACAGCTGGCTCCAGGGATGGTACAGCAGATGCAGTCTGTGTGTTCTGACTG
TGATGGAGAAGGAGAGGTAATTAATGAAAAGGACCACTGTAAAAAATGTGAAGGGAGGAAAGTGATGAAAGAAGTCAAGA
TTCTTGAAGTCCACTTAGACAAAGGCATGAAACATGGACAGAGAATTACATTTACTGGGGAAGCAGACCAGGCCCCAGGA
GTGGAACCAGGAGACATTGTTCTTTTGCTACAAGAAAAAGAGCATGAGGTGTTCCAGAGAGATGGGAATGATTTGCACAT
GACATATAAGATAGGACTTGCTGAAGCTCTTTGAGGATTTCAGTTCCCATTTAAGCACCTTGATGGACGTCAGATTGTGG
TGAAATACCCCCCGGCAAAGTAATTGAACCAGGATGTGTTCGTGTAGTTCGAGGTGAAGGAATGCTACAATATCGTAATC
CCTTTGAAAAAGGTGATCTTTACATAAAGTTTGATGTGCAGTTTCCTGAAAACAACTAGATCAACCCAGATAAACTTTCT
GAATTAGAAGATCTTCTGCCATTTAGACCAGAAGTTCCAAATGTTATTGGAGACACTGAGGAAGTAGAGCTTCAAGAATT
TGATAGCACTCGGGGCTCAGGAGGCAGCCAGGCGCATGAAGCCTATAATGATAGCTCTGATGAAGAAAGCAGTAGCCATC
ATGGACCAGGAGTGCAATGTGCCGGTCAG
ORF - retro_btau_1215 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.25 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYG |
| MANVAD.KL.DILGVPPG.SENELKKAYRKLA.EYHPDKNPNAGDKFKEISFAYEVLSNPEK..LYDRYG |
Retrocopy | MANVADMKL*DILGVPPGTSENELKKAYRKLAEEYHPDKNPNAGDKFKEISFAYEVLSNPEKCKLYDRYG |
|
Parental | EQGLREGSGGGGGMDDIFSHIFGGGLFSFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKN |
| EQGLREG.GGGGGMDDI.S.IFG.GLFSFMGNQSRSRNGRR..EDMMHPLKVSLEDLYNG.TTKLQLSKN |
Retrocopy | EQGLREGTGGGGGMDDISSYIFGRGLFSFMGNQSRSRNGRR--EDMMHPLKVSLEDLYNGRTTKLQLSKN |
|
Parental | VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKV |
| VLC.ACSGQGGKSGAVQKCSACRGRG.RIMIRQLAPGMVQQMQSVCSDC.GEGEVINEKD.CKKCEG.KV |
Retrocopy | VLCRACSGQGGKSGAVQKCSACRGRGLRIMIRQLAPGMVQQMQSVCSDCDGEGEVINEKDHCKKCEGRKV |
|
Parental | IKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALC |
| .KEVKILEVH.DKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGL.EAL. |
Retrocopy | MKEVKILEVHLDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLAEAL* |
|
Parental | GFQFTFKHLDGRQIVVKY-PPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLS |
| GFQF.FKHLDGRQIVVKY.PPGKVIEPGCVRVVRGEGM.QYRNPFEKGDLYIKFDVQFPENN.INPDKLS |
Retrocopy | GFQFPFKHLDGRQIVVKY<PPGKVIEPGCVRVVRGEGMLQYRNPFEKGDLYIKFDVQFPENN*INPDKLS |
|
Parental | ELEDLLPSRPEVPNIIGDTEEVELQEFDSTRGSGGGQRREAYNDSSDEESSSHHGPGVQCAHQ |
| ELEDLLP.RPEVPN.IGDTEEVELQEFDSTRGSGG.Q..EAYNDSSDEESSSHHGPGVQCA.Q |
Retrocopy | ELEDLLPFRPEVPNVIGDTEEVELQEFDSTRGSGGSQAHEAYNDSSDEESSSHHGPGVQCAGQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
38 .14 RPM |
ERP005899_muscle |
0 .05 RPM |
71 .27 RPM |
SRP017611_brain |
0 .09 RPM |
53 .17 RPM |
SRP017611_kidney |
0 .06 RPM |
45 .11 RPM |
SRP017611_liver |
0 .00 RPM |
38 .43 RPM |
SRP030211_testis |
0 .03 RPM |
124 .65 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1215 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1215 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1215 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
7 parental genes, and
14 retrocopies.