RetrogeneDB ID: | retro_btau_1825 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | X:78295322..78296439(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | UVRAG | ||
| Ensembl ID: | ENSBTAG00000016355 | ||
| Aliases: | None | ||
| Description: | UV radiation resistance-associated gene protein [Source:RefSeq peptide;Acc:NP_001179955] |
Retrocopy-Parental alignment summary:
>retro_btau_1825
GCGTTGGTCCGGGGCCCACTCCCCCCACTGCCCATGGGCCGGGCCGCCACGCCCCCGCCAGGTTCTTCTGTGGGGGCCCT
GCATGTGGAGCTGTCATCTCAGCAGTGGCATCTTCAGAACATTGCTGCCTGGAACATTGTTAATAGCCATCAGCTCCTTG
ATACCTACTTCACACTTCACTTGTGTAACAGTGAAAAGGTATACAAAGAATTTTATAGGAGTGAAGTGATTAAGAATTTC
TTGAATACAATATGGTGGAGTCTTGATTTTGGAATAATGCCAGACTGTCTGGATACATCTGTGTCTTGTTTTGTGGTAAA
GATATGGGGTGGAAAGGAGGACATCTACCAGCTGTTGACTGAATGGAAATCTGTTTGGACTGGTTTAAATACCTGGGTCA
GCAGATTCATGCCCGCAACCAGAATGAAATAAATCTGGGGCTGAATGATGGCTAATATGGTGCTGCATTTGAACATAAGG
GTTATTCAAATGCTCAGAAGAATATTCGTCATCAGGTGTATCAGAACTGTGTTTGAAATTCTTATGATGTCTTCTCTTTG
CTGCAGCTTCATAGAGCCCAGTGTGCAATTAAACAGACTCAGGTAACTTCAGAAAATTGGAAAGGGAATTGACGAAAAAA
CTAAAACTCACATCTACAAGCAATGGGCTGAAAAAAGAAAGTGAGTGTCTGCAATTAAAAATTTTGGTGCTTCGAAATGA
ACTGGAAAGACAGAAGAAAGCTTTGGGACAGGAAGTAGTCTTGCTGCATAAAGAAAAAATTGCATTACAGAACAAAGGAA
GTACATTTTCAGCTGAGCACCTCAAGCTTCAACTCCAAAAGGAATCCCTAAATGAGTTGAGAAAGGAGTGCACTGTGAAA
AGAGAACTCTTTCTGAAGACTAATGCTCAGTTGACAATTCGTTGCAGGCAGTTACTATCTGAGCTTTCCTACATTTACCC
TATTGATTTGAATGAGCATAAAGATTACTTTGTATGTGGTGTCAAGTTGCCCAATTCTGAGGACTTCCAAGCAAAAGATG
ATGGAGGCATTGCTGTTGCCCTTGGTTATACTGCACATATGGTATCCATGATCTCCTTTTTCCTACAAGTGCCCATC
ORF - retro_btau_1825 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.74 % |
| Parental protein coverage: | 54.08 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | ASVGGPLPPPPTGPAAALPPGSAARALHVELPSQQRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCNTE |
| A.V.GPLPP.P.G.AA..PPGS...ALHVEL.SQQ....HL.NIAA.NIVN...HQLLDTYFTLHLCN.E | |
| Retrocopy | ALVRGPLPPLPMGRAATPPPGSSVGALHVELSSQQW---HLQNIAAWNIVN--SHQLLDTYFTLHLCNSE |
| Parental | KVYKEFYRSEVIKNSLNPTWRSLDFGIMPDRLDTSVSCFVVKIWGGKEDVYQLLIEWK-VCLDGLKYLGQ |
| KVYKEFYRSEVIKN.LN..W.SLDFGIMPD.LDTSVSCFVVKIWGGKED.YQLL.EWK..CLD..KYLGQ | |
| Retrocopy | KVYKEFYRSEVIKNFLNTIWWSLDFGIMPDCLDTSVSCFVVKIWGGKEDIYQLLTEWK<ICLDWFKYLGQ |
| Parental | QIHARNQNEIIFGLNDGYYGAPFEHKGYSNAQKNILLQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTV |
| QIHARNQNEI..GLNDG.YGA.FEHKGYSNAQKNI..QV.QNCV.NSYDVFSLL.LHRAQCAIKQTQVT. | |
| Retrocopy | QIHARNQNEINLGLNDG*YGAAFEHKGYSNAQKNIRHQVYQNCV*NSYDVFSLLQLHRAQCAIKQTQVTS |
| Parental | Q-KIGKEIEEKLRLTSTSNGLKKESECLQLKILVLRNELERQKKALGREVVLLHKEQIALQDKGSTFSAE |
| ..K...E...KL.LTSTSNGLKKESECLQLKILVLRNELERQKKALG.EVVLLHKE.IALQ.KGSTFSAE | |
| Retrocopy | E<KLERELTKKLKLTSTSNGLKKESECLQLKILVLRNELERQKKALGQEVVLLHKEKIALQNKGSTFSAE |
| Parental | HLKLQLQKESLNELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDF |
| HLKLQLQKESLNELRKECT.KRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDF | |
| Retrocopy | HLKLQLQKESLNELRKECTVKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDF |
| Parental | QAKDDGSIAVALGYTAHLVSMISFFLQVPL |
| QAKDDG.IAVALGYTAH.VSMISFFLQVP. | |
| Retrocopy | QAKDDGGIAVALGYTAHMVSMISFFLQVPI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 2 .67 RPM |
| ERP005899_muscle | 0 .05 RPM | 8 .55 RPM |
| SRP017611_brain | 0 .05 RPM | 9 .78 RPM |
| SRP017611_kidney | 0 .18 RPM | 25 .25 RPM |
| SRP017611_liver | 0 .00 RPM | 8 .99 RPM |
| SRP030211_testis | 0 .00 RPM | 5 .95 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1825 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1825 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1825 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000016355 | 1 retrocopy |
retro_btau_1825 ,
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