RetrogeneDB ID: | retro_btau_198 | ||
Retrocopy location | Organism: | Cow (Bos taurus) | |
| Coordinates: | X:35334720..35335629(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSBTAG00000046045 | |
| Aliases: | MAGEA9, MAGEA9B | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSBTAG00000046143 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_btau_198
GAGGAGGAAGAAGAGGAGGAGCAGCAGATGGAGGAAGAGGAGCAGATGGAGGAAGAAGAGCAGGTGGAGGAGGTGGAGGT
GGTGGAGGTGGTGGAGGTGGTGGAGCAGGTGGAGGAAGGAAATGCAGCTTCCTCTTCCTCCTCTCTCCCGGTCTGGGGCA
CCCTGGAGGAGATGGCTGCTGCTGAAACAGCCAGTCTCCCCCAGAGTCCTGTGGGTGTCTGCCTCTCTCCCACTGCCATG
GCTGACACTCCAGGGAGCCAATCTGAAGACCATGGCCCCAGCGGGCAAGATGAAGTGCCAAGCACCTCGCATGACCACGA
AGATGCCAGCTCCTCACTCCAAGATGCACTACAGGTGAAGAAGAATGAGCTGGCACAATTCCTGCTCAATAGGTATTTTG
CCAGGGAGCCGACCACAAAAGCAGAATTGCTGAGTAGTGTCCTCAGAGATTACCAGGACCACTTCGTGGTGGTCCTCGGT
CAAGCCTCAGAGTACCTGCAGCTGGTCTTTGGTTTGGAGGTGAAGGAGGTGGACCCCAGTGAGTACACCTATATCCTGGT
CCCCACCCTGGGCCTCACCCTCAATGAGATGCTGAGGGATGAGCAGAGGTTGCCCAAGGCTGGCCTCCTGGTGATAGTCC
TGTGCCTGATTGCTGTGGAGGTCAACTCCGCTCCTGAGGAGGCGATCTGGGGCGCACTCAGTAGGATAGGGGTGTATCCT
GGGAGTGAGCACTACATCTATGGGGAGCCCAGGGAGCTGCTGACCCAAGTGTGGGTGCAGGAAGGTTACCTAGAGTACCG
GCAGGTGCCTGACAGCAACCCTGCTTGCTCTGAGTTCCTGTGGGGTCCCCGGGCCTATGTGGAGACCAGCAAGTCTGAAG
TCCTGGAGTATCTGGACAGAGTCAGTTGA
ORF - retro_btau_198 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.9 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VRGTLEEVAAAATPSLPQSPLGVWPSPNAMAATLGSQYEENGLSRQDEVLSTSCDQED--EFFKYALRVK |
| V.GTLEE.AAA.T.SLPQSP.GV..SP.AMA.T.GSQ.E..G.S.QDEV.STS.D.ED.......AL.VK | |
| Retrocopy | VWGTLEEMAAAETASLPQSPVGVCLSPTAMADTPGSQSEDHGPSGQDEVPSTSHDHEDASSSLQDALQVK |
| Parental | KNELVQFLLSRCLAKEPITKAEVLNSVLKDYQDHFLVVFGQASEYLQLVFSLEVKEVDPSEHTYILVPSL |
| KNEL.QFLL.R..A.EP.TKAE.L.SVL.DYQDHF.VV.GQASEYLQLVF.LEVKEVDPSE.TYILVP.L | |
| Retrocopy | KNELAQFLLNRYFAREPTTKAELLSSVLRDYQDHFVVVLGQASEYLQLVFGLEVKEVDPSEYTYILVPTL |
| Parental | GLTLSEMLSDGQRLPKAGLLVVILCLIAVEDGHAPEEEIWGALSRMGVCLG-EHFIYGEPRELLTQVWVQ |
| GLTL.EML.D.QRLPKAGLLV..LCLIAVE...APEE.IWGALSR.GV..G.EH.IYGEPRELLTQVWVQ | |
| Retrocopy | GLTLNEMLRDEQRLPKAGLLVIVLCLIAVEVNSAPEEAIWGALSRIGVYPGSEHYIYGEPRELLTQVWVQ |
| Parental | EGYLVYRQVPDDDPACYEFLWGPQGYVETSKFKDLEYLDRV |
| EGYL.YRQVPD..PAC.EFLWGP..YVETSK...LEYLDRV | |
| Retrocopy | EGYLEYRQVPDSNPACSEFLWGPRAYVETSKSEVLEYLDRV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| ERP005899_liver | 0 .00 RPM | 0 .00 RPM |
| ERP005899_muscle | 0 .00 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
| SRP030211_testis | 0 .89 RPM | 0 .00 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_198 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_198 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_198 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000046143 | 2 retrocopies |
retro_btau_1808, retro_btau_198 ,
|
| Canis familiaris | ENSCAFG00000019160 | 1 retrocopy |