RetrogeneDB ID: retro_cele_3

Retrocopy location

• Organism: Caenorhabditis elegans
• Coordinates: IV:12560867..12561176(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ZK795.4
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: snb-5
• Ensembl ID: C30A5.5
• Aliases: None
• Description: Synaptobrevin-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:P34351]

Sequence

>retro_cele_3
ATGAATCATCAACCACCACCAGTGAGCCGTGTCGGTTGGGACGATCAAAAGATTATGAGAACAAGAAGAGAATTGGATTC
GGTGAAGGCCATTATGAAGGAGAATGTGCAAAAAATCATGGAGAGACAGGGAAAACTTGATGATCTTGTTGAAAGAGCTC
AGAGGCTCGAGGAGGCATCGGATGTGTACGTCAAATGCGCCGTCAAGATAAAACGAGAGATGAGCTGGAAGGCCAATTCT
CTTCGCTACGGGATCATTGCTGTGTCAAGTGTCTCCGCATTTGCAGGACTTGCCTATTCGTTCCTATAA

Alignment

ORF - retro_cele_3 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.02 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNHQPPPVSRIGWDDQKIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVKI
          MNHQPPPVSR.GWDDQKIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVKI
Retrocopy MNHQPPPVSRVGWDDQKIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVKI

Parental  KREMSWKANSLRYGIIAVSSVSAFAGLAYSFL
          KREMSWKANSLRYGIIAVSSVSAFAGLAYSFL
Retrocopy KREMSWKANSLRYGIIAVSSVSAFAGLAYSFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Caenorhabditis elegans was not studied using RNA-Seq expression data.

ChIP-Seq

Caenorhabditis elegans was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_cele_3 retrocopy.

TSS

Caenorhabditis elegans was not studied using FANTOM5 data.

Lab

retro_cele_3 was not experimentally validated.

Homology

Retrocopy orthology:

Caenorhabditis elegans does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Caenorhabditis elegans	C30A5.5	1 retrocopy	retro_cele_3 ,