RetrogeneDB ID: | retro_cfam_1718 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:1023677..1024082(+) | ||
Located in intron of: | ENSCAFG00000009799 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB7 | ||
Ensembl ID: | ENSCAFG00000016258 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.38 % |
Parental protein coverage: | 99.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | GAHPARRYVTDPSGEPDPK-RMPTFPADYGFPGRKEREMVATQQQMNDAQLVLQQRD-YCAHYLIRLL-K |
GA...R..V..PSG.PD.K.R.P..PA...FPG..E.EMV...QQMN..QLVLQQR...CAH.LIRLL.. | |
Retrocopy | GARLGRCCVSHPSGKPDRK>RCPP-PARLRFPGHREHEMVVPRQQMNAMQLVLQQRH<LCAHHLIRLL<Q |
Parental | CKRDSFPNILACKHEQHDWDYCEHLDYVMRMKEFE-RERRLLQRKKRR-EQREA-DVARGQGAGEVAPEV |
CKRDS.PN..ACK.EQ..WD..EHLD..M..KEFE..ER.LLQ.KKR..EQREA.DVARGQGAGEVAP.. | |
Retrocopy | CKRDSLPNSPACKPEQRHWDCREHLDCMMHVKEFE<VERQLLQWKKRQ<EQREATDVARGQGAGEVAPGI |
Parental | AL |
.L | |
Retrocopy | VL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 24 .11 RPM |
SRP017611_brain | 0 .08 RPM | 14 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 59 .37 RPM |
SRP017611_liver | 0 .00 RPM | 17 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011470 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016258 | 1 retrocopy |
retro_cfam_1718 ,
|
Dipodomys ordii | ENSDORG00000015213 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033938 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009615 | 1 retrocopy |