RetrogeneDB ID: | retro_cfam_744 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 16:59368793..59369487(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ADA | ||
| Ensembl ID: | ENSCAFG00000009498 | ||
| Aliases: | ADA, ADA-like | ||
| Description: | adenosine deaminase [Source:HGNC Symbol;Acc:186] |
Retrocopy-Parental alignment summary:
>retro_cfam_744
GAGGTGGTGGCCCTGGTGAGCCAGAGCCTGCAGGAGGGAGAACGGGACTTCAAGGTGAAAGTGAGGTCCATCCTGTGCCA
CCTGCGCCACCAGCCCAGTTGGCCCCTGGAGGTGGTGGAGCTGTGTCCGAAGTACCAGCAGACTGTGGTGGCCATCGACC
TGGCAGGAGACGAGACCATTAAAGGGAGCAGTGTCTTCCTGGGACACGTGAAGGGCTACCAGGAGGCTGTGAGGAGAGGC
ATCCACCGCACTGTGCATGCAGGGGAGTGGGCTCAGCGGAGGTGGTCAAAGAGGCTGTGGACATGCTCAAGACGGAGAGG
CTGGGCCATGGCTACCACACGCTGCAGGACGAGGCCCTTTATGACAGGCTGCAGCAGGAAAACATGCACTTCGAGATCTG
CCCCTGGTCCCGTTACCTCACAGGCCCCTGGAACTCGGACACGGAGCATGCAGTGGTTCGGCTCAAACATGACCAGGCTA
CCTACTCCCTCAACACGGATGACCCACTCATCTTCAAGTACACCCTGGAACGGATTACCAGATGCCCAAAGAGGGCATGG
ACTTTGCCGAGGAGGAGTTTAAGAGACTGAACATCAATGCGGCAAAGTTTAGTTTCCTCCCAGAAGATGAAAAGAAGCAG
CTTCTTGATCTGCTCTCTAAAGCCTATGGGATGTCATCTTTGGATGCTTCAGGG
ORF - retro_cfam_744 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 88.03 % |
| Parental protein coverage: | 64.09 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | EVVALVSQSLQEGERDFKVKVRSILCCLRHQPSEYTEVVELCQKYQQTVVAIDLAGDETIKGSSLFPGHV |
| EVVALVSQSLQEGERDFKVKVRSILC.LRHQPS...EVVELC.KYQQTVVAIDLAGDETIKGSS.F.GHV | |
| Retrocopy | EVVALVSQSLQEGERDFKVKVRSILCHLRHQPSWPLEVVELCPKYQQTVVAIDLAGDETIKGSSVFLGHV |
| Parental | KAYEEAVRRGIHRTVHAGE-VGSAEVVKEAVDTLKTERLGHGYHTLEDEALYARLRQENMHFEICPWSSY |
| K.Y.EAVRRGIHRTVHAGE.VGSAEVVKEAVD.LKTERLGHGYHTL.DEALY.RL.QENMHFEICPWS.Y | |
| Retrocopy | KGYQEAVRRGIHRTVHAGE<VGSAEVVKEAVDMLKTERLGHGYHTLQDEALYDRLQQENMHFEICPWSRY |
| Parental | LTGAWKSDTEHAVVRLKNDQANYSLNTDDPLIFKSTLE-TDYQMTKQGMDFTEEEFKRLNINAAKSSFLP |
| LTG.W.SDTEHAVVRLK.DQA.YSLNTDDPLIFK.TLE.TDYQM.K.GMDF.EEEFKRLNINAAK.SFLP | |
| Retrocopy | LTGPWNSDTEHAVVRLKHDQATYSLNTDDPLIFKYTLE<TDYQMPKEGMDFAEEEFKRLNINAAKFSFLP |
| Parental | EDEKKQLLDLLYKAYGMPSLDAAG |
| EDEKKQLLDLL.KAYGM.SLDA.G | |
| Retrocopy | EDEKKQLLDLLSKAYGMSSLDASG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 1 .64 RPM |
| SRP017611_brain | 0 .00 RPM | 4 .76 RPM |
| SRP017611_kidney | 0 .00 RPM | 8 .92 RPM |
| SRP017611_liver | 0 .00 RPM | 14 .94 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_744 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_744 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_744 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000009498 | 1 retrocopy |
retro_cfam_744 ,
|
| Macaca mulatta | ENSMMUG00000010603 | 1 retrocopy | |
| Monodelphis domestica | ENSMODG00000016207 | 1 retrocopy |