RetrogeneDB ID: | retro_chof_1673 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_35517:6222..6751(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000010971 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.15 % |
Parental protein coverage: | 56.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTSLLGKKDDELQYRPDVKDASDQREDV |
SFNPVCASDGSSYNNPCFV.EAS.IKQEQID..H.GHC.DT.DTSLLGKKDD.LQYRPD.KDA.DQR... | |
Retrocopy | SFNPVCASDGSSYNNPCFVWEASYIKQEQIDTWHVGHCIDTNDTSLLGKKDDGLQYRPDMKDAGDQRRWL |
Parental | YMGNHMPCP-ENLNGYCIHGKCEFTYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQKLTHVLIAAII |
Y.G.....P.ENLNGYCI.GKCEFTYST.KASCRCESGYTGQHCEKTDFSILYVVPSRQ.LTHVLI.AI. | |
Retrocopy | Y-GKPYALP>ENLNGYCIPGKCEFTYSTLKASCRCESGYTGQHCEKTDFSILYVVPSRQTLTHVLITAIT |
Parental | GAVQIAVIVAIVMCITRKCPKNNRGRRQKQNLGHFTSD |
GAVQIA.IVAIVMCITRKCPKNNRG..QK.NL.HFTSD | |
Retrocopy | GAVQIAIIVAIVMCITRKCPKNNRGC*QKENLSHFTSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021991 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010971 | 3 retrocopies |
retro_chof_1673 , retro_chof_449, retro_chof_881,
|
Tursiops truncatus | ENSTTRG00000014374 | 1 retrocopy |