>retro_chof_1720
TTGGTCTGTGTGGTAGCAGAGGAACTTGAGAATGTTCACATATTACCAAGGACAGTTCTCTACATGGCTGATTCACAAAG
TTTCATTAGCCTGGAAGAGTGTCGTGGCCATAAGAGAGCAAGGAAAAGAACTAGTGTGGAAACAGCATTTGCCTTTGAGA
AACTATTTCCAAAACAATGCCAGGTCCTTGGAATTGTGACCCCAGGAACTGTAGTGACTCCAATGGGATCAGGCAACAAT
CGACCTCAGGAAATAGAGACTGGAGAATCTGGTTTTGCTCTTATTATTTCCTCAGATTGAAGGAATAAAAATACAGCCCT
TTGATTTTATTAAGAATCCAAAGAATATAACTCTAGAAAGGCATCAACTCACTGAACTGGGTCTTTTAGATAACCCTCAA
CTTCATGTAGTCCTTTTATTTGGCTATAACTGCTGTAAATTGGGAGCCTGTTAATTACCTGTATTATGTAGTCAGCACTT
TCAGTGGTATGCATATCATCTTGGCTGGAAGTCAGGTGGACATCCTTTTATCACTGACTTCAAGAAAGAACTCTTTGGAT
ATTGATGCCACTGGTGTGGTTGGACTGTCATTTATTGAACACTGAATGCAGAGTGCTACAGTGCTCCTCAACGAGGATGG
CAATGATAAGAAGACTGCTGAGGCTGCATGCAATGCCTCAAAGCAGCCAACATTCCAGAACAGAATACCATGGGTTTCAT
GTTTGCATGCGTTGGCAGGGGCTTTCAATATTATAGAGCGAAGGGGATGTTGAGCTGATGCATTTAGAAAGTTCTTTCCT
AGTGTTCCCTTATTTGGCTTCTTTGGAAATGGAGAAATAGGATGTGATCGGATCGTCACTGGGAACTTTATATTGAGGAA
ATGTAATGAGGTAAAGGATGATGATCTGTTTCATAGTTATACAACAATAATGGCACTT
ORF - retro_chof_1720 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.03 % |
Parental protein coverage: |
77.72 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | LVRVVAEELENVHILPRTVLYMADSETFFRLEECRGHKRARKRTSMETAFALEKLFPKQCQVLGIVTPGI |
| LV.VVAEELENVHILPRTVLYMADS..F..LEECRGHKRARKRTS.ETAFA.EKLFPKQCQVLGIVTPG. |
Retrocopy | LVCVVAEELENVHILPRTVLYMADSQSFISLEECRGHKRARKRTSVETAFAFEKLFPKQCQVLGIVTPGT |
|
Parental | VVTPMGSGNNRPQEIEIGESGFAL-LFPQIEGIKIQPFHFIKDPKNITLERHQLTEVGLLDNPELWVVLV |
| VVTPMGSGNNRPQEIE.GESGFAL.LFPQIEGIKIQPF.FIK.PKNITLERHQLTE.GLLDNP.L.VVL. |
Retrocopy | VVTPMGSGNNRPQEIETGESGFAL>LFPQIEGIKIQPFDFIKNPKNITLERHQLTELGLLDNPQLHVVLL |
|
Parental | FGYHCCKVGAS-NYLHHVVSTFSDMKIILAKGQVDNLSSLTE-KNSLDTDITTGVIRLSFSEP-IQSATV |
| FGY.CCK.GA..NYL..VVSTFS.M.IILA..QVD.L.SLT..KNSLD.D..TGV..LSF.E...QSATV |
Retrocopy | FGYNCCKLGAC>NYLYYVVSTFSGMHIILAGSQVDILLSLTSRKNSLDID-ATGVVGLSFIEH*MQSATV |
|
Parental | FFNKDVNEK-TAEAM-MQCLKAASIP---TIGFVFVCTGRD-FHYRVKENVKAGPFRKFFPGVPLFGFFG |
| ..N.D.N.K.TAEA..MQCLKAA.IP...T.GF.F.C.GR..F.........A..FRKFFP.VPLFGFFG |
Retrocopy | LLNEDGNDKKTAEAA<MQCLKAANIPEQNTMGFMFACVGRG>FNIIERRGC*ADAFRKFFPSVPLFGFFG |
|
Parental | NGETGCDWIVTGNIILRKCNKVKDDDLFHSYTTTINL |
| NGE.GCD.IVTGN.ILRKCN.VKDDDLFHSYTT...L |
Retrocopy | NGEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMAL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1720 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.