RetrogeneDB ID: | retro_chof_1748 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_374071:141..969(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ABT1 | ||
Ensembl ID: | ENSCHOG00000005188 | ||
Aliases: | None | ||
Description: | activator of basal transcription 1 [Source:HGNC Symbol;Acc:17369] |
Percent Identity: | 93.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEAEESGKEAAKQEPLEGEDQKPGPEEEQEDPGEEACVGKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYG |
MEA.ESGKEAAKQEPLEGEDQKPGPEEEQEDPG.EACVGKKRVVPGIVYLGHIPPRFRPLHV.NLLSAYG | |
Retrocopy | MEAKESGKEAAKQEPLEGEDQKPGPEEEQEDPGDEACVGKKRVVPGIVYLGHIPPRFRPLHVHNLLSAYG |
Parental | EVGRVFFQPEDGFVRRKKKKAAAAGATGGKKGSRYSKDYTEGWVEFRDKRVAKRVAASLHNTPMGARRRS |
EVGRVFFQPEDGFVRRK.K.AAAAGATGGKKGSRYSKDYTEGWVEFRDKRVAKRVAASLHNTPMG.RRRS | |
Retrocopy | EVGRVFFQPEDGFVRRKTKAAAAAGATGGKKGSRYSKDYTEGWVEFRDKRVAKRVAASLHNTPMGSRRRS |
Parental | PFRYDLWNLKYLHRFTWSHLSDHLAFERQVRRQRLRAEVAQAKRETDFYLRSVERGQRFLAADGDPARPN |
PFRYDLWNLKY.HRFTWSHLS.HLAFE.QV.RQ.LRAEVAQAK.ETDFYLRSVERGQRFLAADGDPARPN | |
Retrocopy | PFRYDLWNLKYPHRFTWSHLSEHLAFEHQVHRQHLRAEVAQAKCETDFYLRSVERGQRFLAADGDPARPN |
Parental | GSWAFAQHPTEQELRARRLA-PGGRERTHLATAQDQARSNQGLLARIFGAPPPSEDM-GPAVARDN |
GSWAFAQHPTEQELRARRLA.PGGRER..L.TAQDQARSNQGLLARIFGAPPPSEDM.GPAVARDN | |
Retrocopy | GSWAFAQHPTEQELRARRLARPGGRERARLTTAQDQARSNQGLLARIFGAPPPSEDM*GPAVARDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005188 | 1 retrocopy |
retro_chof_1748 ,
|
Cavia porcellus | ENSCPOG00000008937 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024149 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006914 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026316 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016335 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017585 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003493 | 1 retrocopy |