RetrogeneDB ID: | retro_chof_1922 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_424039:217..598(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NDUFAF2 | ||
| Ensembl ID: | ENSCHOG00000013975 | ||
| Aliases: | None | ||
| Description: | NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 [Source:HGNC Symbol;Acc:28086] |
Retrocopy-Parental alignment summary:
>retro_chof_1922
GGACAAACTATTCGAGAGAAAAGAATTGTAGAAGCAGCAATTATCAAAGAAGTAGGCTATGAAATACAGGATATTCCAAC
AGAGTGGGAAGCTTGGATTAGAAGAACAAGAAAGACTCCACCTACTATGGAGGAAATACTAAAGAATGAAAAATATAGAG
AAGAAGTGAAGATCGAAAGCAAAGAACTTTATGAAAAAGAAAAACTGCTAAGTAAAGAGAGCAAAGAGGAACTCTTGGCT
CCGCTGGTTCAAACTCAAATTAAAGGGCATGCCTCTGCTCCATGCCATGGAAAGGAAGAACACTCAGAGGATCCCAGTAG
CACTGGTAAAACCTTTCAGCCAGGATCCTGGATGCCACAAGATGGCAAGAGCCGAAATGAA
ORF - retro_chof_1922 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 87.4 % |
| Parental protein coverage: | 75.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GQTIREK-IVEAANIKEVGYEIQDIPTEWEAWIRRTRKIPPTMEEILKNEKHREEMKIKSKELNEKEKLL |
| GQTIREK.IVEAA.IKEVGYEIQDIPTEWEAWIRRTRK.PPTMEEILKNEK.REE.KI.SKEL.EKEKLL | |
| Retrocopy | GQTIREKRIVEAAIIKEVGYEIQDIPTEWEAWIRRTRKTPPTMEEILKNEKYREEVKIESKELYEKEKLL |
| Parental | NKESKEELLALPVQTQIKGHASAPYYGKEEPSEDPTSTGKTFQPGSWMPQDGKSQNK |
| .KESKEELLA..VQTQIKGHASAP..GKEE.SEDP.STGKTFQPGSWMPQDGKS.N. | |
| Retrocopy | SKESKEELLAPLVQTQIKGHASAPCHGKEEHSEDPSSTGKTFQPGSWMPQDGKSRNE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1922 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013975 | 2 retrocopies |
retro_chof_1922 , retro_chof_733,
|
| Callithrix jacchus | ENSCJAG00000015375 | 1 retrocopy | |
| Homo sapiens | ENSG00000164182 | 1 retrocopy |