RetrogeneDB ID: | retro_chof_227 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | GeneScaffold_4982:37321..37588(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SRGN | ||
| Ensembl ID: | ENSCHOG00000000448 | ||
| Aliases: | None | ||
| Description: | serglycin [Source:HGNC Symbol;Acc:9361] |
Retrocopy-Parental alignment summary:
>retro_chof_227
TCTCTCCTCATTCTGTTTTGGGAATCTTCAGTTCAAGATTACACCATGTGGACAGCCAGGTACCAGTGGGTAGGCTGCAG
TCCAGACAGTAATTCTGCAAACTGCATTGAGGAAAAGGGACCAATGTTTGACCTACCTCCTGGCAAAACTGACAGAATCC
ACCCTCCAAGGACTGACCCTTTTGCAATGATAAGGTTCCAGAACATGCTTGATGTCATCCCTCTTTCTGAGAAGTATTCT
GGGTCAGGCTTTTGTTCTGGATTGGGT
ORF - retro_chof_227 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.17 % |
| Parental protein coverage: | 58.17 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ALSILIGESSVQGYPMRRARYQWVRCSPDSNSANCIEEKGPVFNLPPGESNRLLPPRTDSLPMKSLLNVQ |
| .L.IL..ESSVQ.Y.M..ARYQWV.CSPDSNSANCIEEKGP.F.LPPG...R..PPRTD...M....N.. | |
| Retrocopy | SLLILFWESSVQDYTMWTARYQWVGCSPDSNSANCIEEKGPMFDLPPGKTDRIHPPRTDPFAMIRFQNML |
| Parental | EVFPLSEDYSGSGSGSGSG |
| .V.PLSE.YSGSG..SG.G | |
| Retrocopy | DVIPLSEKYSGSGFCSGLG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_227 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 12 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017969 | 1 retrocopy | |
| Choloepus hoffmanni | ENSCHOG00000000448 | 9 retrocopies |
retro_chof_1085, retro_chof_1907, retro_chof_1936, retro_chof_1950, retro_chof_227 , retro_chof_2572, retro_chof_403, retro_chof_876, retro_chof_935,
|
| Dasypus novemcinctus | ENSDNOG00000006889 | 2 retrocopies |