RetrogeneDB ID: | retro_chof_874 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_159766:881..1459(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CYB5R1 | ||
| Ensembl ID: | ENSCHOG00000006457 | ||
| Aliases: | None | ||
| Description: | cytochrome b5 reductase 1 [Source:HGNC Symbol;Acc:13397] |
Retrocopy-Parental alignment summary:
>retro_chof_874
CTCATCGTTAAGCAGGTCATCAGCCGTGACACCCAGCGGTTCCGCTTCGCCCTCCCGGCGCCCCATCACGTCCTGGGCCT
CTCCATCGGCCAGCACATCTACCTCTCTGCTTGAATCAATGGCAATTTGGTCATCTGGCCCTACACACCCATCTCCAACA
AGACAACGAGGGCTTCAGGGACCTGGTCATCAAGGTTTACTTTAAAGACACCCATCCAAGTTTCCTGCTGGAGGGAAGAT
TCCCGGTGCCTGGAAAGCATGAATATTGGAGATACCATTGAATTCCAGGCCCGAACTGGCTACTGGTCTACCAGGGCAAA
GGAAAGTTTGCCATCTGTCCAGACAAGAAGTCCAGTTCCATAGTCAAGATGGTCAAGTCAGTCAGCATGATTGCAGGAGG
AAGGGGCATCACCCCAATGCTGCAGATGATCTGTGCCATCCTGAAGGACCTGGCCAACCACACCCTGTGCCACCTGCTCT
TCGCCAACCATACCAAGAAGGACATTCTGCTGCGGCCTGAGCTGGAGGAACTGAGTAATGAGCATTCCGCTTGCGTCAAG
CTCTGGTACATGGTAGAC
ORF - retro_chof_874 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.57 % |
| Parental protein coverage: | 75.78 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | LLDKTTVSHNTKKFRFALPTAHHILGLPVGKHVYLSARIDGCLVIRPYTPVTS-DEDQGYVDLVIKVYLK |
| L..K...S..T..FRFALP..HH.LGL..G.H.YLSA.I.G.LVI.PYTP........G..DLVIKVY.K | |
| Retrocopy | LIVKQVISRDTQRFRFALPAPHHVLGLSIGQHIYLSA*INGNLVIWPYTPISN<QDNEGFRDLVIKVYFK |
| Parental | GVHP-KFPEGGKM-SQYLNSLKIGDMVEFR-GPSGLLTYTGKGNFNIQPNKKSPPEPRMAKKLGMIAGGT |
| ..HP.KFP.GGK..S..L.S..IGD..EF..GP..LL.Y.GKG.F.I.P.KKS.....M.K...MIAGG. | |
| Retrocopy | DTHP<KFPAGGKI<SRCLESMNIGDTIEFQ<GPNWLLVYQGKGKFAICPDKKSSSIVKMVKSVSMIAGGR |
| Parental | GITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQAQHPNRFKLWFTVD |
| GITPMLQ.I.AILKD....T.C.LLFAN.T.KDI.LR..LEEL...H....KLW..VD | |
| Retrocopy | GITPMLQMICAILKDLANHTLCHLLFANHTKKDILLRPELEELSNEHSACVKLWYMVD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_874 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006457 | 1 retrocopy |
retro_chof_874 ,
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