>retro_cjac_1566
ATGGTGAAGCTGGCAGCCAAATGCATCCTGGCAGGAGACCCAGCAGTGGGCAAGAGCACCCTGGCCCAGATCTTCCACAG
TGACGGAGCCCATTTCCAGAAGAGCTATACACTGACAACAGGAATGGATTTGGTGGTAAAGACAGTGCCAGTTCCTGACA
CAGGAGACAGTGTGGAACTCTTCATTTTTGACTCTGCTGGCAAGGAGCTGTTTTCGGAAATGCTGGATAAATTGTGGGAG
AGTCCCAACGTCTTCTGTCTCGTCTATGATGTGACCAATGAACAGTGCTTCAACAACTGCAGCAAGTGGCTGGAGAAGGC
TCGGTCACAGGCTCCAGGCATCTGTCTCCCACGTGTTTTAGTTGGGAACAAGACAGACCTGGTCAGCAGACAATAAGTGG
ACTCCGCTGAGGCCCGGGCGTGGGCGCTGGGCCAGGGCCTTGAATGCTTTGAAACATCCCTGAAGGAGATGGAAAACTTT
GAAGGCCCTTTCCACTGCCTGGACAAGCATTTCCAACAGCTGTACCGGGAGAAGATGGAGGTTTTCTGGGCACTGGTG
ORF - retro_cjac_1566 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.48 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVKLAAKCILAGDPAVGKTALAQIFCSDGAHFQKSYTLTTGIDLVVKTVPVPDTGDSVEFFIFDSAGKEL |
| MVKLAAKCILAGDPAVGK..LAQIF.SDGAHFQKSYTLTTG.DLVVKTVPVPDTGDSVE.FIFDSAGKEL |
Retrocopy | MVKLAAKCILAGDPAVGKSTLAQIFHSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKEL |
|
Parental | FSEMLDKLWENPNVLCLVYDVTSEQSFSNCSKWLEKARSQAPGICLPGVLVGNKTDLASRQAVDSTEARA |
| FSEMLDKLWE.PNV.CLVYDVT.EQ.F.NCSKWLEKARSQAPGICLP.VLVGNKTDL.SRQ.VDS.EARA |
Retrocopy | FSEMLDKLWESPNVFCLVYDVTNEQCFNNCSKWLEKARSQAPGICLPRVLVGNKTDLVSRQ*VDSAEARA |
|
Parental | WALGQGLEFFETSVKELEDFKAPFHCLAEQFHQLYREKLKVFQALV |
| WALGQGLE.FETS.KE.E.F..PFHCL...F.QLYREK..VF.ALV |
Retrocopy | WALGQGLECFETSLKEMENFEGPFHCLDKHFQQLYREKMEVFWALV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .80 RPM |
1 .24 RPM |
SRP051959_heart |
0 .51 RPM |
2 .33 RPM |
SRP051959_kidney |
0 .53 RPM |
2 .35 RPM |
SRP051959_liver |
0 .32 RPM |
1 .82 RPM |
SRP051959_lung |
1 .01 RPM |
2 .59 RPM |
SRP051959_lymph_node |
0 .98 RPM |
1 .23 RPM |
SRP051959_skeletal_muscle |
0 .15 RPM |
3 .58 RPM |
SRP051959_spleen |
0 .99 RPM |
2 .29 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_1566 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_1566 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_1566 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.