>retro_cjac_1680
ATTCTTGAATGCCGTGCTGAGAAGAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTGAAAATAAAAGATACCAGTA
GGCAGTTCAGAAGTGGGATGAAGTACTACAGTTAACTCCAAATCATGCTACCCTATATGAGATGAAATCACAGGTGCTAA
TGTCTCTGCATGAAATGTTCCCAGCAGTACCTGCAGCAGAAATCAGCGTGCAGCAAAATCCACATTCGTGGGAGTCTTGG
CAAACTTTGGGACATGCTCAACTTGGATTAGGAAAGATAATCCTGGCAATTCAAGTAGCCCTTCACATCTATCCAGTGAA
CCCTGAAATATGGAAAGAAGACCTCTCTTGGGCAAGAACACTCCAGGAGCAGCAGAAGGTAGCCCAGATGATTTTAAAAA
AAGTGAAGCACCAGCTGACGTAACACACTTTTCACCCAAGTCAATTCCAGACTATGACTCCAAAAGTGATGAGATTTATT
GCTGTTTGTGCGGCTATTGCTGAGAAACAGAAGACAGTTTCAGCAAATAAAACAATGGTTACTGTGTCCACTTCTGGGGC
CCTAGAGACTGTAACTGAAGAGGAAGATGGTGCTACACCACCAGATGGCTCTGTTTTTGTCAGAGCC
ORF - retro_cjac_1680 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.42 % |
Parental protein coverage: |
80.84 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ILEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAV |
| ILE..AEKSKQLKDEGASLAENKRY..A.QKWDE.LQLTPN.ATLYEMKSQVLMSLHEMFPAV.AAE..V |
Retrocopy | ILECRAEKSKQLKDEGASLAENKRYQ*AVQKWDEVLQLTPNHATLYEMKSQVLMSLHEMFPAVPAAEISV |
|
Parental | QRNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKVAQRIKKSEAP |
| Q.NPHSWESWQTLG.AQLGLG.IILAI...QVALHIYP.NPEIWKEDLSWARTLQEQQKVAQ.I.K.... |
Retrocopy | QQNPHSWESWQTLGHAQLGLGKIILAI---QVALHIYPVNPEIWKEDLSWARTLQEQQKVAQMILKKVKH |
|
Parental | AEVTH-FLPKSIPDYDFESDEIVAVCAAIAEKEKTVSANKTMVIVSASGAVETVTEKEDGATPPDGSVFI |
| ....H.F.P..............AVCAAIAEK.KTVSANKTMV.VS.SGA.ETVTE.EDGATPPDGSVF. |
Retrocopy | QLT*HTFHPSQFQTMTPKVMRFIAVCAAIAEKQKTVSANKTMVTVSTSGALETVTEEEDGATPPDGSVFV |
|
Parental | KA |
| .A |
Retrocopy | RA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .20 RPM |
23 .85 RPM |
SRP051959_heart |
0 .14 RPM |
27 .87 RPM |
SRP051959_kidney |
0 .00 RPM |
30 .84 RPM |
SRP051959_liver |
0 .19 RPM |
18 .45 RPM |
SRP051959_lung |
0 .10 RPM |
24 .97 RPM |
SRP051959_lymph_node |
0 .21 RPM |
27 .05 RPM |
SRP051959_skeletal_muscle |
0 .04 RPM |
30 .79 RPM |
SRP051959_spleen |
0 .06 RPM |
28 .07 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_1680 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_1680 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_1680 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.