>retro_cjac_2844
GAAAGTATGGGCAGATCACACGTTGCTTCCCCCGGCCCTTGTCCTGACAGAATGCCCCCGCCATCACCCACTGAGTCTAG
GCACAGCCTCTCAATCCCTCCCTTCTCCAGCCCCCCAGAGCAGAAAGTGGGTCTTTACCAGAGACAAACTGAACTTCAAG
ACAAAAGTGAATTTTCAGATGTGGACGAGCTAGTTTTTAGGGATAATGAGAAATCTAAATCATCTTTTGAATATACAAGG
AACATGCCAAGGCGGTTTGAAATGGATGGGCTCTCTCCTGCCGGGGATATGCCTCATGTGGGCACTGCTGCAGCTGCTGT
GCCCCTCTCATATCAGCACCCAAGTGTACATCAGAAACAAATTGAAGAACAAAAGGAAGAAGAAAAAATATGGGAACAGC
AAGTGAAAGAACGAGGGCAGAGAGAAGAAAGAAGGCAGAGTAACCTACAAGAAATTTTAGAGAGGGAACGAAGAGAACTA
GAAAAACTGTATCAGGAAAGGAGGATGACTGAAGAATCACTGAAGATTGAAATGGAAAATGAATTAGAAGTGAGTAATCA
AGAAATGAAAGACAAATTTGTTCGCAGTGAAAACCCTTTAGAGAAATACATGAAAATCCTCCAGCAGGAGCAAGACCAGG
AGTCGGCAGATAAGAAGTCAAAAAACATGGTCCAAGAAGGCTCCCTAGTGGACACACTGCAGTCTAGTGACAAAGTAGAA
AGTTTAACAGACTCTCCTCATGAAGAACCAGATGACTCTTGG
ORF - retro_cjac_2844 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.1 % |
Parental protein coverage: |
93.63 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ESLGRSHVASPSPCPDRMTLPSPTESRHSLSIAPFS-PPEQKAGLYQRQTELQNKSEFSDVDKLAFKDNE |
| ES.GRSHVASP.PCPDRM..PSPTESRHSLSI.PFS.PPEQK.GLYQRQTELQ.KSEFSDVD.L.F.DNE |
Retrocopy | ESMGRSHVASPGPCPDRMPPPSPTESRHSLSIPPFSSPPEQKVGLYQRQTELQDKSEFSDVDELVFRDNE |
|
Parental | DSESSFEW--NVPRQFEMDGLSPAGDMPPVGTDAAAEPLSYQHPSIDQKQIDE-KEEEKIREQQVKERRQ |
| .S.SSFE...N.PR.FEMDGLSPAGDMP.VGT.AAA.PLSYQHPS..QKQI.E.KEEEKI.EQQVKER.Q |
Retrocopy | KSKSSFEYTRNMPRRFEMDGLSPAGDMPHVGTAAAAVPLSYQHPSVHQKQIEEQKEEEKIWEQQVKERGQ |
|
Parental | REERSQSNLQEILERERRELEKLDQERRMPDKSVKIEMENELEMSNQEMKDKSAHSENPLEKYMKIIQQE |
| REER.QSNLQEILERERRELEKL.QERRM...S.KIEMENELE.SNQEMKDK...SENPLEKYMKI.QQE |
Retrocopy | REERRQSNLQEILERERRELEKLYQERRMTEESLKIEMENELEVSNQEMKDKFVRSENPLEKYMKILQQE |
|
Parental | KDQELADKSSQKMVQEGSPVDTLQSSDKVESLTGFSPEEPDDSW |
| .DQE.ADK.S..MVQEGS.VDTLQSSDKVESLT....EEPDDSW |
Retrocopy | QDQESADKKSKNMVQEGSLVDTLQSSDKVESLTDSPHEEPDDSW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .00 RPM |
5 .15 RPM |
SRP051959_heart |
0 .02 RPM |
6 .75 RPM |
SRP051959_kidney |
0 .00 RPM |
10 .12 RPM |
SRP051959_liver |
0 .00 RPM |
5 .70 RPM |
SRP051959_lung |
0 .00 RPM |
10 .05 RPM |
SRP051959_lymph_node |
0 .00 RPM |
11 .32 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
5 .98 RPM |
SRP051959_spleen |
0 .00 RPM |
8 .66 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_2844 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_2844 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_2844 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.