RetrogeneDB ID: | retro_cjac_3132 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:43151983..43152327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000010668 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPMFIV-NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSS-DPCALCSLHSIGKI |
MPMFIV.NT.VPRASVPDGF.SELTQQ.AQATGKPPQYIAV.VVPDQLMAF.G.S..PCALCS.HS.GK. | |
Retrocopy | MPMFIV>NTSVPRASVPDGFFSELTQQQAQATGKPPQYIAVPVVPDQLMAF-GGS>EPCALCSRHSRGKT |
Parental | GGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNASNVGWNNSTFA |
GG..N.S.SKLLCGLLAERLRISPDRVYINYYDMNA.NVGWNN.TFA | |
Retrocopy | GGMKNCSDSKLLCGLLAERLRISPDRVYINYYDMNATNVGWNNWTFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 3 .73 RPM |
SRP051959_heart | 0 .00 RPM | 5 .14 RPM |
SRP051959_kidney | 0 .00 RPM | 6 .52 RPM |
SRP051959_liver | 0 .00 RPM | 2 .97 RPM |
SRP051959_lung | 0 .00 RPM | 4 .46 RPM |
SRP051959_lymph_node | 0 .00 RPM | 4 .75 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 6 .01 RPM |
SRP051959_spleen | 0 .00 RPM | 3 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010668 | 3 retrocopies |
retro_cjac_2903, retro_cjac_3132 , retro_cjac_357,
|
Cavia porcellus | ENSCPOG00000013520 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014555 | 1 retrocopy | |
Equus caballus | ENSECAG00000012792 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012052 | 3 retrocopies | |
Mus musculus | ENSMUSG00000033307 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000012184 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006589 | 6 retrocopies |