>retro_cjac_3286
GCCTCAGCCGCAGGCCCCTCAATCACCGTCACTTCATCTCCCTGACTGTCCGCAGGCCTGGGCAGAATGGCCTTATTCAT
GGTCTGGCCTCCTGGTGCTGATGACGCCGCTGGCCTCCCTGGCCCCTCGCCTGGCCCCCATCCTGACCTCGGCAGCCTGG
CTGGTGAATGACACACTCTATGTACACCTGCAGCCAGGCATGAGCCTGGAAGGCCCGGCTCAGCCCCAGTCCACCCCCAT
GTGGGCCACGTTTGAGGTTCTTGATTTCATCACACACCTCTATGCTGGCCCCGACATCCACAGGCATCTGGATGTCAGAA
TCCTACTGACCAATATCCGAACCAAGAGCAGCTTTCTCCCTCCCCTGCCTACCTCAGTCCAGAATCTCGCCCACCTGCCA
GAAGTCATGTTGACAGACTTCCAGACCCTGGATGGAAGCCAGTACAACTCAGTCAAGCAGCAGGTAGTGTGTTATGCCAC
CAGCTGTTACAGCTGTTGTCTGCAACTGGCCTCAGTGCTGCTATACCCCGATTATGGGACAGGAGAAGTGCGTGTGGAGC
CCCTGGATATCCCCTTATCCTCGACGATCAGGCCAGCTTCCCCCATGTCCAGGTCTCCAAAGCAGCCAGTGTGTGGCTAC
TACCGTGGCTCTGTGGGTGACACGTTTGACCACCTGCACAATGCCCACAAGGTGTTGCTCAGTGTGTACGTCCTGGCCCA
GGAGCAGCTGGTGGTGGGAATAGCAGACCAAGATCTGTTGAAGAGCAAGTTGCTCCCTGAGCTGCTCCAACCTTATACAG
GACACATGGAACATCTGAGTGAGTTCCTGATGGATGTCAAGCCCTCCTTGACTTTCCATGTTGTCCCCCTGCTGGACCCC
TATGGGCCCACTGGCTTTGACCCCCTCCCTGGAGTTCCTGGTGGTCAGCAAGGAGACCTATCATGGGGGAATGGCCATCA
ACCGCTTCTGCCTGGAGAATGACCTGGAGGAGCTTGCCTTGTACCAGGTCCAGCTGCTGAAGGACCTAAGTCATATGGAG
AATGACGAGGACAAAGTCAGCTCCTCCAGCTTCCATCAGCAAATTCTGGGAAACCTGCTTTGGCCTTCATATGAGAGGCC
AGAGCTCCCCTAGTCTCTA
ORF - retro_cjac_3286 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.94 % |
Parental protein coverage: |
64.08 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | AQPRGSVCQAPSPPPAPLGLGRMAVFQ-SGLLVLTTPLASLAPRLAPILTSAARLVNDTLYVHLQPGMSL |
| A...G......S.P....GLGRMA.F..SGLLVL.TPLASLAPRLAPILTSAA.LVNDTLYVHLQPGMSL |
Retrocopy | ASAAGPSITVTSSP*LSAGLGRMALFM>SGLLVLMTPLASLAPRLAPILTSAAWLVNDTLYVHLQPGMSL |
|
Parental | EGPAQPQSTPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSTFLPPMPTSVQNLAHPPEVVLTD |
| EGPAQPQSTP..ATFEVLDFITHLYAG.D.HRHLDVRILLTNIRTKS.FLPP.PTSVQNLAH.PEV.LTD |
Retrocopy | EGPAQPQSTPMWATFEVLDFITHLYAGPDIHRHLDVRILLTNIRTKSSFLPPLPTSVQNLAHLPEVMLTD |
|
Parental | FQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVLLYPDYGTGEVPVEPLDVPLPSTIRPASPVARSPKQP |
| FQTLDGSQYN.VKQQ.V.YATSCYSCC..LASVLLYPDYGTGEV.VEPLD.PL.STIRPASP..RSPKQP |
Retrocopy | FQTLDGSQYNSVKQQVVCYATSCYSCCLQLASVLLYPDYGTGEVRVEPLDIPLSSTIRPASPMSRSPKQP |
|
Parental | VRGYYRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVD |
| V.GYYRG.VG.TFD.LHNAHKVLLSV..VLAQEQLVVG.AD.DLLKSKLLPELLQPYT...EHLSEFL.D |
Retrocopy | VCGYYRGSVGDTFDHLHNAHKVLLSV-YVLAQEQLVVGIADQDLLKSKLLPELLQPYTGHMEHLSEFLMD |
|
Parental | VKPSLTFDVIPLLDPYGPAGSD-PSLEFLVVSEETYRGGMAVNRFRLENDLEELALYQIQLLKDLRHTEN |
| VKPSLTF.V.PLLDPYGP.G.D.PSLEFLVVS.ETY.GGMA.NRF.LENDLEELALYQ.QLLKDL.H.EN |
Retrocopy | VKPSLTFHVVPLLDPYGPTGFD>PSLEFLVVSKETYHGGMAINRFCLENDLEELALYQVQLLKDLSHMEN |
|
Parental | EEDKVSSSSFRQRMLGDLLRPPYERPELPPSL |
| .EDKVSSSSF.Q..LG.LL.P.YERPELP.SL |
Retrocopy | DEDKVSSSSFHQQILGNLLWPSYERPELP*SL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .20 RPM |
3 .64 RPM |
SRP051959_heart |
0 .23 RPM |
4 .14 RPM |
SRP051959_kidney |
0 .27 RPM |
6 .97 RPM |
SRP051959_liver |
0 .17 RPM |
5 .70 RPM |
SRP051959_lung |
0 .10 RPM |
4 .29 RPM |
SRP051959_lymph_node |
0 .07 RPM |
4 .98 RPM |
SRP051959_skeletal_muscle |
0 .24 RPM |
5 .35 RPM |
SRP051959_spleen |
0 .08 RPM |
4 .58 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_3286 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_3286 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_3286 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.