RetrogeneDB ID: | retro_cjac_3542 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01183708.1:6494..6662(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000036789 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.14 % |
Parental protein coverage: | 94.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | NCLNPGDRDHPGQHGETPTKK---KISWARWFTPVIPALWEAEVGGSPEPRRSRLQ |
.CL..G..D..GQH.ETP......KISWA.W.TP..PA..E.EVG.SPEP.R.RLQ | |
Retrocopy | DCLSSGV*DYSGQHSETPPPQKSTKISWA*WCTPIDPAT*ESEVG*SPEPGR*RLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .44 RPM | 1 .11 RPM |
SRP051959_heart | 0 .32 RPM | 0 .63 RPM |
SRP051959_kidney | 0 .51 RPM | 0 .73 RPM |
SRP051959_liver | 0 .19 RPM | 0 .71 RPM |
SRP051959_lung | 0 .44 RPM | 0 .85 RPM |
SRP051959_lymph_node | 0 .53 RPM | 0 .87 RPM |
SRP051959_skeletal_muscle | 0 .20 RPM | 0 .39 RPM |
SRP051959_spleen | 0 .46 RPM | 0 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000036789 | 16 retrocopies |