RetrogeneDB ID: | retro_cpor_1032 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:19685711..19686377(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPC25 | ||
Ensembl ID: | ENSCPOG00000005926 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | MVEDELALFDKSINEFGNKFRNTLSDTPC-QMLGLRDACKDSIKTLAEKLSVKLKEEEK-MVEMFLEYQN |
MVEDE..LFDKSINEFGNKF.NTL.DT...QM.GLRDACKDSI..LAEK.SVKLKEE...MVEMFLEYQ. | |
Retrocopy | MVEDEWELFDKSINEFGNKF*NTLNDTSI<QMVGLRDACKDSINGLAEKFSVKLKEENE<MVEMFLEYQE |
Parental | QVCKQNKLI-QEKKDNLLKLIAEVKGKTQ-EMEVLTANIQDLKEEYSRKRETISTANKANEERLKRLQKS |
QVCK.NKLI.......L..L....K.K...E.EVLT.NIQDL.EEYSRK.ETISTAN.ANE.RLKRLQ.S | |
Retrocopy | QVCKHNKLIQEKEDNLLKLLAEK*KAKSR<ELEVLTTNIQDL-EEYSRKKETISTANRANE-RLKRLQRS |
Parental | ADLYKDRLGLEIR-KIYGDKLQFIFTNIDSKHPENPFMFSLRLNEAGDYEVSDSAPHLECLAEFQENVRK |
ADLYKD.LGLEIR.K.YGDKLQ..FT.IDSKHPENPFMFSL.LNE.GDY.VSDSAP.............. | |
Retrocopy | ADLYKD*LGLEIR<KLYGDKLQILFTSIDSKHPENPFMFSLYLNETGDYKVSDSAP*VP--SRISRECKE |
Parental | TNNFSAFLANVRKAF-TATVYN |
...F..F.......F.TA.VYN | |
Retrocopy | DQQFFSFSCQCWESF>TAMVYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 0 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .63 RPM |
SRP017611_liver | 0 .00 RPM | 1 .04 RPM |
SRP040447_lung | 0 .03 RPM | 3 .46 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013303 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000005926 | 1 retrocopy |
retro_cpor_1032 ,
|
Dasypus novemcinctus | ENSDNOG00000004429 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015642 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004668 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007753 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012559 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006112 | 1 retrocopy |