>retro_cpor_1384
GACCTAGGTGAAAGACTCTCTTGGCATGTAAAGCAAATTTTTATTGATGTACTTGAGTTACTACTCCAAGATAAAGATTT
AAAAGGGATTGGGCACCACCTGAAAAAGCCAGGGGGCTGCCACCAGGATTGCAATTATAAAAAGAAGCGAGTAAGTAAGA
TTCTAGACAAAGGAATCAGACAAGTGGTAGAAAAGTTTGAAGGGTCCAAGGAGCTGGCAGAAAGAAGCACGTTTCATTTT
TTAGAAAATGATATAGAGCAAGTCAACCAGTTGGCTGTGTTTGTGGAGGCCGCACTAGACTACCATAAACAGTGCACAGA
GATCTTGCAGGAGCTGCAGGGCAAGCTGTAGATGAAGATAATGACTGCACACCGTGTCCCCAGGTACGAGTACAAGCCAA
GACTGGTGCAGAGGAGTTCTGTAGGCTCAGTGGTTTTCTACCTCTGCAGCAAAGATGTCAGGGCCTAACCCTCCCAGCAG
CAGCCCTGCCACCATGGTCTCTATGACTTTGAGTCAGAAAAACAAAGAAAATTAAGATTTTAAAGACAAGGACATTATTA
CAGTAACTAATAGA
ORF - retro_cpor_1384 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.71 % |
Parental protein coverage: |
57.83 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | EVKDSLDINVKQTFIDPLQLL-QDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESK |
| .....L...VKQ.FID.L.LL.QDKDLK.IGHHLKK..G...D..YKKKRV.KI.D...RQ.VEKFE.SK |
Retrocopy | DLGERLSWHVKQIFIDVLELLLQDKDLKGIGHHLKKPGGCHQDCNYKKKRVSKILDKGIRQVVEKFEGSK |
|
Parental | ELAERSMFNFLENDVEQVSQLAVFVEAALDYHKQTTEILQDLQRKLQMRISAAASVLRREYKPRPVKRSP |
| ELAERS.F.FLEND.EQV.QLAVFVEAALDYHKQ.TEILQ.LQ.KL.M.I..A..V.R..Y...P..... |
Retrocopy | ELAERSTFHFLENDIEQVNQLAVFVEAALDYHKQCTEILQELQGKL*MKIMTAHRVPR--YEYKPRLVQR |
|
Parental | SELNGVS-STSTAKTTGSNIP-MDQPCCRGLYDFEPENQGEL-GFKEGDIITLTNQ |
| S....V..STS.AK..G.N.P...QPC..GLYDFE.E.Q..L..FK..DIIT.TN. |
Retrocopy | SSVGSVV>STSAAKMSGPNPP<QQQPCHHGLYDFESEKQRKL>DFKDKDIITVTNR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
28 .93 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .00 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
SRP040447_lung |
0 .00 RPM |
0 .10 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
0 .01 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1384 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1384 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.