RetrogeneDB ID: | retro_cpor_518 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:7647430..7647899(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DR1 | ||
Ensembl ID: | ENSCPOG00000003282 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.7 % |
Parental protein coverage: | 89.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SSSGNDDDLTIPRAAINKMIKETLPNVR-VANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV |
SS..N.DD..IPRAAI.K.IK..LPN...VA..ARELVVNCCTE..HLISSEA.EICN.SEKKT.SPEH. | |
Retrocopy | SSPDNTDDHAIPRAAISKTIKGALPNAQ<VASNARELVVNCCTELTHLISSEASEICNTSEKKTVSPEHT |
Parental | IQALESLGFGSYISEVKEVLQECKTVALKRRKANSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEW |
.QAL.SLGFG.YIS.VKEVLQ.CK.VAL.RRKA.S.LEN.GIPEE..L..QQEL..KA.QQQAELA.Q.W | |
Retrocopy | LQALGSLGFGLYISAVKEVLQKCKMVALERRKASSHLENPGIPEEG*LSRQQELCTKAKQQQAELAPQDW |
Parental | LQMQQ-AAQQAQLAAASAS |
L..Q...AQQA.LAAASAS | |
Retrocopy | LPVQR<GAQQARLAAASAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .33 RPM |
SRP017611_kidney | 0 .52 RPM | 17 .06 RPM |
SRP017611_liver | 0 .00 RPM | 9 .36 RPM |
SRP040447_lung | 0 .00 RPM | 18 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 10 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017815 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003282 | 1 retrocopy |
retro_cpor_518 ,
|
Loxodonta africana | ENSLAFG00000017540 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010684 | 1 retrocopy |