>retro_cpor_62
ATGAATTTGGGGAGTCTAACTACATGGAATCAAACTTCAAGCACTGACTTCATCCTTGTGGGGCTCTTCATGGACACCAA
GCATGCCGCTTTGCTCTACACCATGATCTTCATATTCTTCTTGCTGGCTCTGGCCAGCAGTGCCATTCTCATTGCCCTGA
TCCACTTGGACCTCTGCCTCCACACGCCCATGTACTTCCTCCTCAGCCAGCTGTCACTCATGGACCTCCTAAACATATCC
ATCACGGTGCCCAAGATGCTTGTGGGCCAGGTCACTGGAGATCACACAATTTCCCCCTTGGGCTGTGAGATCCAGATGTC
CTTTTACCTGACCCTGGCTGGGGCTGAGTTCTTCCTCCTAGGAGTGATGGCCTATGACAAATATGCTGCCATTTGCAGGC
CTCTCCACTACCTACTACTGATGAGCCCAAGGGTGTGCCGACTGCTGGCGGACAGTTCCCGGTGTGTGGGGATACTGGAT
GCCCTGCTGATCGCCCTCATCACCCTGAGCTTCCCCTACTGTCAGTCTAGGAGAATCCTGAGCTTCTTCTGTGAAGCCCC
CGCCCTGCTCAAGCTCTCCTGCTCTGACATCTGCCTCTACAGCTTGCTCATGTACTTGTGCTGCGTGCTCATGATCCTGG
TCCCCATCCTGGTCACTTTGGGCTCCTACACCCTGATCCTGTGCCTCATCCAAAGGACGAACTCAGCCAAAGGCCCCAGC
GAGGCCTTTGCCACCTGCTCCTCACACATAATCGTGGTGGTGCTATTCTATGGAGCCACCCTCTATTTCTACATCCTTCC
CAGCCCCTACCACACAGCCCGGCAGGACATGATGGGGTCTGCCTTGTATACAATCATCACGCCAGTGCTGAACCCTCTCA
TCTACAGCCTGCAGAACAAGGATGTCGCAAGGGCCCTGAGCAGCATGGTTCAGCCAAGAGCGAGCTTCAGGAGT
ORF - retro_cpor_62 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.29 % |
Parental protein coverage: |
97.78 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GSLTPWNQTLSTDFILVGLFMDTKHAALLYTVIFIFFLLALARSALFSVLIHLDLHLHRLMYFLLSQLSL |
| GSLT.WNQT.STDFILVGLFMDTKHAALLYT.IFIFFLLALA.SA....LIHLDL.LH..MYFLLSQLSL |
Retrocopy | GSLTTWNQTSSTDFILVGLFMDTKHAALLYTMIFIFFLLALASSAILIALIHLDLCLHTPMYFLLSQLSL |
|
Parental | MDLLYMPVTVPEILVSQVTGDHTISPSGCGIQIFFYLTQAGAKFFHLGAMAYDQYAAICRPLHYPLLMNH |
| MDLL....TVP..LV.QVTGDHTISP.GC.IQ..FYLT.AGA.FF.LG.MAYD.YAAICRPLHY.LLM.. |
Retrocopy | MDLLNISITVPKMLVGQVTGDHTISPLGCEIQMSFYLTLAGAEFFLLGVMAYDKYAAICRPLHYLLLMSP |
|
Parental | RACLLLTTGCWFLGSVDGFMLTSVTMTFPFCGSQEFHHFFCEVPAVTKLSCSDTSLYKTLMYLCCVLMIL |
| R.C.LL.......G..D.......T..FP.C.S.....FFCE.PA..KLSCSD..LY..LMYLCCVLMIL |
Retrocopy | RVCRLLADSSRCVGILDALLIALITLSFPYCQSRRILSFFCEAPALLKLSCSDICLYSLLMYLCCVLMIL |
|
Parental | NPVIVISSSYTSILLTILRMNLEEGWKKALATCSSHMTVVLLFYGVAVYTYMLSSSYHTPQKNMVDSVFY |
| .P..V...SYT.IL..I.R.N...G...A.ATCSSH..VV.LFYG...Y.Y.L.S.YHT....M..S..Y |
Retrocopy | VPILVTLGSYTLILCLIQRTNSAKGPSEAFATCSSHIIVVVLFYGATLYFYILPSPYHTARQDMMGSALY |
|
Parental | TILTPVLNTLIYSFRNKDVTEALNILPQ |
| TI.TPVLN.LIYS..NKDV..AL....Q |
Retrocopy | TIITPVLNPLIYSLQNKDVARALSSMVQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .00 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
SRP040447_lung |
0 .00 RPM |
0 .00 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
0 .00 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_62 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_62 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.