>retro_crei_5
CCCTCTGATGAGGCATTCGCAGGTGTGGACTTCATGCGGTTGCTGCACAAGGGGCACGCAGCATGCTAAGGACACGCGCG
TGGTGAGTGGGTTCAAGCCTGGTGACCGCATACGATAATTGGAGGGCACGGGGCTGTTCGACAAGGAGATGGCCACCTAT
TCACAGGACATTTTTACACCGTGACTTGGCAGAAGGGCTATAGGTTCGCCGTAGAGGGCAAGCGACGCCTGCATAGCCCG
TCGGAAATGCTGTTGGTTCGTGAAGTGACCAGGGTCGCAGGCGGGGTGGCAAGCGCCAGGCAGAGGCAGCACAGGAGCAG
CGCCAGGTGCGGCGTGTTGCGCGTGCTCTTGCCACAACTCAGCAGCCGTGTCAGCAGCAGGCTACACGCG
ORF - retro_crei_5 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.4 % |
Parental protein coverage: |
70.65 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | PGENDLAGVDFMLSLH-KG-QHAKDTRVVSGFKPGDRVRLLEATGLFDKEMATYSQDF-FYTVTRQKGYR |
| P.....AGVDFM..LH..G.QHAKDTRVVSGFKPGDR.R.LE.TGLFDKEMATYSQD..FYTVT.QKGYR |
Retrocopy | PSDEAFAGVDFMRLLH>RGTQHAKDTRVVSGFKPGDRIR*LEGTGLFDKEMATYSQDI<FYTVTWQKGYR |
|
Parental | FAMEGKRRLHSPSEMLLQQATRAIEAQEAPPAAPANKPAGKRGSRKREQARQLPSRPTVQLPA |
| FA.EGKRRLHSPSEMLL...........A.............G...R....QL.SR....L.A |
Retrocopy | FAVEGKRRLHSPSEMLLVREVTRVAGGVASARQRQHRSSARCGV-LRVLLPQLSSRVSSRLHA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.
Chlamydomonas reinhardtii was not studied using ChIP-Seq data.
Chlamydomonas reinhardtii was not studied using EST data.
Chlamydomonas reinhardtii was not studied using FANTOM5 data.
retro_crei_5 was not experimentally validated.
Retrocopy orthology:
Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.