RetrogeneDB ID: retro_dnov_10

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: GeneScaffold_7509:105307..105892(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000016923
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSDNOG00000018185
• Aliases: None
• Description: None

Sequence

>retro_dnov_10
TTTAGTTCATCCCTGGCAAAAGCAGTTATTAAAACTACTGAAGATTATATGCAGCCTCAGTTTGGCCCCGGCAGACTTTT
ACATTCAGCGGTTGTGCCAGAAGGGTCAGGACTTCAAGATTGCTCCACACATCAAACAGCATCAGATCATAGCCATGATG
AAATATCAGACCTAGACAGCTACAAATCAAACAGTAAAAACAATTCCTGTCTTATATCAGAATCCAAGAGAAACAGACCT
GTCAGTGTTCCGGTGGGTCAACTGAGAGTTGCAGAATACTCTTCTTTAAAATTTCAGTCAGCTCAGAATTGGCATAGAAT
CCCTCAAAGACTGAAACTTCAATCAAGAATGATTAGAGTAACAGCTTACAAAAATGGATCTAGAACAGTCTTTGCCAAAG
TTACTGTGCCATCCATCACCTTGTTGCTGGAGGAATGCACTGAAAAGCTGAAGCTGAACATGGCTGCGAGAAGAGTGTTC
TTGGCAGACGGCACTGAAGCCCTTGAACCTAAAGATATACCCCATGAAGCTGATGTTTATGTTTCAACTGGAGAGCCCTT
TTTAGATCCATTCAAAAAAATTAAA

Alignment

ORF - retro_dnov_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.49 %
• Parental protein coverage: 55.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC
          FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC
Retrocopy FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC

Parental  LILESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT
          LI.ESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT
Retrocopy LISESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT

Parental  LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK
          LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK
Retrocopy LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	0.00 RPM
SRP012922_cerebellum	0.14 RPM	0.14 RPM
SRP012922_heart	0.23 RPM	0.00 RPM
SRP012922_kidney	0.55 RPM	1.10 RPM
SRP012922_liver	0.15 RPM	0.00 RPM
SRP012922_lung	0.31 RPM	1.37 RPM
SRP012922_quadricep_muscle	0.00 RPM	0.00 RPM
SRP012922_spleen	0.23 RPM	0.00 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_10 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000018185	1 retrocopy	retro_dnov_10 ,