RetrogeneDB ID: | retro_dnov_2004 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_41552:4713..5187(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL10 | ||
Ensembl ID: | ENSDNOG00000002678 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 10 [Source:HGNC Symbol;Acc:22042] |
Percent Identity: | 72.39 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LGLDGCGKSTFLRVLSGKPPLEGHVPTWGFNSVRLPTKD-FEVDLLEIGGSQNLRFYWKEFVNEVDVLVF |
LG.DG.GK..FL.VL..KPP.E.H.P.WGFNS.RLPTKD.F.VDLLEIG.SQ.L.F..KEFVNEVD..V. | |
Retrocopy | LGPDGSGKIPFLHVLYRKPPAEVHIPAWGFNSTRLPTKDLFKVDLLEIGVSQKLSFH*KEFVNEVDAGV- |
Parental | VVDSADRLRLPWARQELHKLLDKDPDLPVVVVANKQDLSEAMSVVELQRELGLQAVDSQREVFLLAASIA |
VVDSA..LRLPWA.QE.HKLLDKDP.LPV.VVA......EAM.VVEL..ELGLQAV.SQ.E.FLLAAS.A | |
Retrocopy | VVDSAEGLRLPWAQQEPHKLLDKDPLLPVSVVA----MREAMRVVELWWELGLQAVHSQPELFLLAASVA |
Parental | PAGPGFGEPGTVHIWRLLLELLS |
P.GPGF..PGTVHI.RLLLELLS | |
Retrocopy | PSGPGFHKPGTVHIQRLLLELLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1 .75 RPM |
SRP012922_cerebellum | 0 .00 RPM | 2 .75 RPM |
SRP012922_heart | 0 .00 RPM | 1 .39 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .46 RPM |
SRP012922_liver | 0 .00 RPM | 2 .17 RPM |
SRP012922_lung | 0 .00 RPM | 3 .21 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 7 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001642 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002678 | 1 retrocopy |
retro_dnov_2004 ,
|
Oryctolagus cuniculus | ENSOCUG00000016961 | 1 retrocopy |