RetrogeneDB ID: | retro_dnov_2499 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_8063:41485..42234(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 59.61 % |
Parental protein coverage: | 57.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | ELNDDCMKSPDFVHVHMQGQEALFSENMPLREVIYLMEQMPAGTPRGESM-RTPFQGPQNIPLQTGHGDE |
.L..DC.KSPDFVHVH.QGQ..LF.ENMPLREVI..........P..E.....P...P..I.LQT..G.E | |
Retrocopy | DLTKDCVKSPDFVHVHTQGQKILFFENMPLREVIFISWNKYQQEP*EERV*EPPSEVPYAIFLQTR*GNE |
Parental | YKDD-SNIFVKRNQINVNITSQGNQVPYVVIIQEDDSPKPEEGSGSWKNLHNFRRAELGSPTSQEGSL-G |
YK.D.SNI.VK.NQIN..IT..GNQVP..VIIQED..PK.EE.S.SW.NLHN..RAE.G...SQEGSL.G | |
Retrocopy | YKEDNSNISVKTNQINDSITCRGNQVPFLVIIQEDNNPKAEEWSVSWENLHNSSRAEIGPSRSQEGSL<G |
Parental | ESS-SQDVPMEVETQFLPRTDQASPKPALTNQSSDGTSRCGINQERVHSPPK-SYKCEDCPRIFRFPSQL |
.SS..Q.VP.EV..QF..R..Q.SPKPA.TNQS.DG.SRCG.N.ERVH.PP..SY..EDCPRIF.....L | |
Retrocopy | RSS<YQNVPVEVGPQFFSRPAQNSPKPAPTNQSNDGSSRCGVNEERVHRPPH>SYRYEDCPRIFSISLRL |
Parental | EAHQRRHRNERPFVCT-ECHKGFF-QTSDLHV-HQKIHMAEKPFR |
EAHQR.HRNER.FVC..E.HK....QTS.LHV..Q..H..E..F. | |
Retrocopy | EAHQRIHRNERTFVCV>EYHKNYL>QTSSLHV>YQMNHIGEEDFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .27 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .15 RPM | 0 .00 RPM |
SRP012922_lung | 0 .31 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .11 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies |
retro_dnov_1048, retro_dnov_1253, retro_dnov_1287, retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499 , retro_dnov_2556, retro_dnov_2666, retro_dnov_859, retro_dnov_964,
|
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |