RetrogeneDB ID: | retro_dnov_576 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | GeneScaffold_6361:137063..137409(+) | ||
| Located in intron of: | ENSDNOG00000014021 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BCL7B | ||
| Ensembl ID: | ENSDNOG00000003035 | ||
| Aliases: | None | ||
| Description: | B-cell CLL/lymphoma 7B [Source:HGNC Symbol;Acc:1005] |
Retrocopy-Parental alignment summary:
>retro_dnov_576
CTCCTTGAATTCCAGGATGATAACAGCAACCAGAGTTCTATTTCAGATGCCTACCAGCTCAAGGTGGACAGCAGCACCAA
CTCAAGCCCCGGCTCCCAGAAGAGCATGGTCCTGAACCCAGTGCACACCTTGGACTTCGGCACAGACAAATCCCAGCTAC
CCGCTCTGGGTCAGAAGATCCTCGAGGAGACCTCCCTGCCTGCCTCAGAAGTTGCTGGTGAACTTCCCATCCTTCACAAA
GGAAGAGCCAGTTCCACTAGAGACAGAGATTGCTGAGGAAGAGGAAGACTCCAGGGCCCCACCCCAGAAGCACGTCTATG
TGGACCAACATGCAGTGCCATAGACA
ORF - retro_dnov_576 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.14 % |
| Parental protein coverage: | 67.25 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LLEFQDDNSNQSSVSDVYQLKVDSSTNSSPSPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPASE |
| LLEFQDDNSNQSS.SD.YQLKVDSSTNSSP..Q.S..L.P.HT.DF.TD.SQ.P.LGQ.ILEE.SLPASE | |
| Retrocopy | LLEFQDDNSNQSSISDAYQLKVDSSTNSSPGSQKSMVLNPVHTLDFGTDKSQLPALGQKILEETSLPASE |
| Parental | VADEPPTL-TKEEPVPLETQIAEEEDDSGAPPLKRFCVDQPTVPQT |
| VA.E.P.L.TKEEPVPLET.IAEEE.DS.APP.K...VDQ..VP.T | |
| Retrocopy | VAGELPIL>TKEEPVPLETEIAEEEEDSRAPPQKHVYVDQHAVP*T |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 5 .64 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 12 .78 RPM |
| SRP012922_heart | 0 .23 RPM | 4 .87 RPM |
| SRP012922_kidney | 0 .00 RPM | 7 .94 RPM |
| SRP012922_liver | 0 .00 RPM | 5 .26 RPM |
| SRP012922_lung | 0 .31 RPM | 8 .40 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 10 .56 RPM |
| SRP012922_spleen | 0 .00 RPM | 9 .84 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_576 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000003035 | 1 retrocopy |
retro_dnov_576 ,
|
| Dasypus novemcinctus | ENSDNOG00000013429 | 1 retrocopy | |
| Ochotona princeps | ENSOPRG00000002414 | 2 retrocopies |