RetrogeneDB ID: | retro_dnov_827 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11150:127715..128473(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000000398 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000015893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.13 % |
Parental protein coverage: | 94.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | PEHWFSEWQRLAEAAQAEQL--PELQEAAAAQPEHKPRELRRLCQNPATAAARLHKDRVCQ-QPGLSLWV |
PEHWFSEW........A.....PELQEAAAAQPEHKP.ELRRLCQNPATAAARLHK.R.C..QPGL.L.V | |
Retrocopy | PEHWFSEWRAAPGRGRAGRAAAPELQEAAAAQPEHKPQELRRLCQNPATAAARLHKARACH<QPGLPLQV |
Parental | PFQNAATAVTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKRRRTI-RREDLISFLCGKAPPPRNSR |
PFQNAATAVT.L.KESVDT.QRSFDIGIQIGYQRR.KDVLAWVK.RR....REDLISFLCGK.PPP.NSR | |
Retrocopy | PFQNAATAVTSLCKESVDTRQRSFDIGIQIGYQRRSKDVLAWVKKRRRT<CREDLISFLCGKVPPPGNSR |
Parental | APPRLTVESPN-RATSTETSSSVETDVQPFPETVALHGLSGAMASIARSSPGS-PPRVSSGSNARSRR-S |
APP.LTV..PN.R.TS.E.SSSVE...QPF.E..ALHGLSGAMASIARSSP....P...S......RR.S | |
Retrocopy | APPGLTVVPPN<RSTSAEASSSVEAGLQPFREAAALHGLSGAMASIARSSPQA<SPPRVSSGSNARRRRS |
Parental | GLHDVDVNTFTSEEMALHLDNGGARKRTSAQWGDVFTDSTTHKRNRMI |
GLHDVDVNTFTSEEMALHLDNGGARKRTSAQWGDVFTDSTTHKR.RMI | |
Retrocopy | GLHDVDVNTFTSEEMALHLDNGGARKRTSAQWGDVFTDSTTHKRSRMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 7 .78 RPM |
SRP012922_cerebellum | 0 .00 RPM | 5 .36 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 3 .56 RPM |
SRP012922_liver | 0 .00 RPM | 4 .64 RPM |
SRP012922_lung | 0 .00 RPM | 10 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 7 .27 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010719 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010925 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015893 | 3 retrocopies |
retro_dnov_1575, retro_dnov_2266, retro_dnov_827 ,
|
Equus caballus | ENSECAG00000009430 | 1 retrocopy | |
Homo sapiens | ENSG00000182831 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010744 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005378 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014707 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022507 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010106 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003909 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007088 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007751 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002545 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000028454 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009324 | 1 retrocopy |